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The map label for this gene is glgB

Identifier: 110635011

GI number: 110635011

Start: 2907555

End: 2909771

Strand: Reverse

Name: glgB

Synonym: Meso_2677

Alternate gene names: 110635011

Gene position: 2909771-2907555 (Counterclockwise)

Preceding gene: 110635012

Following gene: 110635010

Centisome position: 65.94

GC content: 62.29

Gene sequence:

>2217_bases
ATGAGCGCGGCGGCCGATGCAGCTCCATGGAGGCTCGACGACCCCCATGTTATCGGCGCGCTGGTGGCGGGCCGGCTTGC
AGACCCGTTTGCGATATTGGGGCCGCATCAGACGGCGGCCGGTCTCGTGCTGCGGGTGCTGCGCCCCGAAGCCGATACGG
CGGAGGCAATCGATCCTGATTCCGGCAGTAGCTACGGCAAGCTGCTCAAGCGTCATGCGCGGGGCTTCTTCGAGGGCCTG
ATCTCGAAGAACACAGCCGTTCCGAGATACCGGCTTCGTTTCACCCGCGAGGGTGACACCTGGGACGAAGAGGATGCCTA
CCGGTTCCCCAGCACCTTCGGGGACCTCGATCTATATCTGCTTGGCGAGGGGCGGCACCAGCGTCTCTATGAAAAGCTCG
GCGCGCATCCGATGGCCTGCGATGGGGTGGATGGCACCCGCTTTGCCGTTTGGGCGCCCAATGCGAGCCGCGTCAGCGTG
GTCGGCAATTTCAACAATTGGGATGGCCGCCGCCATCAGATGCGGCTTCATCCGGGGATCGGCGTCTGGGAAATCTTCGT
GCCGGGCGCAAAACCGGGAAATCTTTACAAATACGAGATCATCGGCCGCAACGGCGAGTTGCTGCCCCCGAAAGCCGATC
CGGTGGGTTTTCGTGCGGAGGTGCCGCCGGCGACTGCTTCCGTCGTCAACGGTCTGCCTCAAATGGAATGGGGCGATGGT
GAGTGGGTGGAGCACCGCATCGGAAAGAACGATCGGAAAGCCCCGATCTCGATCTATGAGGTGCATCTGGGTTCCTGGCG
CCGCCATGAGGATGGCCGTTACCTCTCTTACGATGAACTGGCCGACCGGCTGCTTCCCTATGTGAAGGATCTCGGCTTCA
CCCACATCGAGTGCATGCCGGTGAGTGAGCATCCCTTTTCCGGTTCGTGGGGGTACCAGCCGGTCGGCCTTTATGCTCCG
ACAAGTCGCTTCGGCACGCCGGAGGACTTTGCCCGCTTCGTCGATCGCTGCCATCATGAAGGGATCGGAGTCATCATCGA
TTGGGTGCCGGCGCATTTCCCTTCGGACGCGCACGGGCTTGCCCGTTTCGACGGCACGGCGCTTTACGAGCACGAGGACC
CGCGGCTCGGCTTCCATCGTGACTGGAACACGCTCATCTACAATTTCGGGCGACGAGAGGTCGCGAATTTCCTCACCGCT
AACGCGCTTTTCTGGCTCGACCGGTACCATGTGGACGGCCTGCGCGTGGATGCGGTCGCCTCGATGCTTTACCTCGACTA
CAGCCGCCAGCCAGGCGAGTGGATCCCCAACAAACACGGCGGCAACGAGAACCTCGAGGCGATCGCATTCCTCAGGGAAA
CGAACACGGCGCTTTTCGGCTCCCACCCCGGCACCACATCGATCGCGGAAGAATCGACGGCTTTTCCCGGTGTTTCCCGG
CCGGTCTATGCCGGAGGGCTTGGCTTCGGCTTCAAGTGGAACATGGGCTGGATGCACGACACGCTGGATTACATGCAGCA
CGAGCCGATCCATCGCCAGCATCATCACGACCGCATGACCTTCGGCCTGATTTATGCCTTCTCGGAAAACTTCATCCTGC
CGCTCAGCCATGACGAGGTGGTGCACGGCAAGGGGTCCCTGATCGGCCGCATGCCCGGCGACCGGTGGCAGAAATTTGCG
AATCTGCGCGCCTATTTCACCTTCATGTGGACTCATCCCGGCAAGAAGCTTCTCTTCATGGGCGGAGAATTCGCCCAGGA
GCGCGAGTGGAACCACGACTGGCAGCTCGACTGGCACCATCTGGACGATCCGATGCACCGGGGCGTGCACGATCTCATCC
GCGATCTGAACCGGATTTACAGGAGCGAGCCTGCGCTGCATGAGCTCGATTGCGAGCCCGAAGGTTTCGAGTGGATCGAT
GCCTCGGACCCCAGCATCAGCACCTATGTCTACATGCGAAAGGGGACCGGCGGTGCGCGGCCGGTGGTCGTGGCCTGCAA
CTTTACGCCGGTCGTGCGCGAGAACTTCCGCATCGGTTTGCCGAACGCAGGCATCTGGCGGGAGATCCTGAACAGCGACG
ACCGCCGCTATGGAGGCTCGGACGTCACCAACGGAACTGTAACCGCGACCACCGACGAGCCGTGGCACGGCCGGCCTGCT
TCAGCGATCCTGAGGCTGCCCCCGCTGGGCAGCGTCGTGCTTGTGGGTGAAGCGTGA

Upstream 100 bases:

>100_bases
AGAAGGGTTTCTACGAAATCAACTACGAACTCTCCAACCGGCCGGACTGGGTGGGCATCCCCGTGCAGGGCGTGCTCGAC
CTGATCGAAAGGAGGAGCGG

Downstream 100 bases:

>100_bases
CAGGAGACCCACACGTGCGTGTAGAAATTGGCCTTCCATACCCGCTCGGCGCGACATGGGACGGGTCGGGCGTCAATGTC
GCCGTCTTCTCGGCCCATGC

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase; Glycogen-branching enzyme; BE

Number of amino acids: Translated: 738; Mature: 737

Protein sequence:

>738_residues
MSAAADAAPWRLDDPHVIGALVAGRLADPFAILGPHQTAAGLVLRVLRPEADTAEAIDPDSGSSYGKLLKRHARGFFEGL
ISKNTAVPRYRLRFTREGDTWDEEDAYRFPSTFGDLDLYLLGEGRHQRLYEKLGAHPMACDGVDGTRFAVWAPNASRVSV
VGNFNNWDGRRHQMRLHPGIGVWEIFVPGAKPGNLYKYEIIGRNGELLPPKADPVGFRAEVPPATASVVNGLPQMEWGDG
EWVEHRIGKNDRKAPISIYEVHLGSWRRHEDGRYLSYDELADRLLPYVKDLGFTHIECMPVSEHPFSGSWGYQPVGLYAP
TSRFGTPEDFARFVDRCHHEGIGVIIDWVPAHFPSDAHGLARFDGTALYEHEDPRLGFHRDWNTLIYNFGRREVANFLTA
NALFWLDRYHVDGLRVDAVASMLYLDYSRQPGEWIPNKHGGNENLEAIAFLRETNTALFGSHPGTTSIAEESTAFPGVSR
PVYAGGLGFGFKWNMGWMHDTLDYMQHEPIHRQHHHDRMTFGLIYAFSENFILPLSHDEVVHGKGSLIGRMPGDRWQKFA
NLRAYFTFMWTHPGKKLLFMGGEFAQEREWNHDWQLDWHHLDDPMHRGVHDLIRDLNRIYRSEPALHELDCEPEGFEWID
ASDPSISTYVYMRKGTGGARPVVVACNFTPVVRENFRIGLPNAGIWREILNSDDRRYGGSDVTNGTVTATTDEPWHGRPA
SAILRLPPLGSVVLVGEA

Sequences:

>Translated_738_residues
MSAAADAAPWRLDDPHVIGALVAGRLADPFAILGPHQTAAGLVLRVLRPEADTAEAIDPDSGSSYGKLLKRHARGFFEGL
ISKNTAVPRYRLRFTREGDTWDEEDAYRFPSTFGDLDLYLLGEGRHQRLYEKLGAHPMACDGVDGTRFAVWAPNASRVSV
VGNFNNWDGRRHQMRLHPGIGVWEIFVPGAKPGNLYKYEIIGRNGELLPPKADPVGFRAEVPPATASVVNGLPQMEWGDG
EWVEHRIGKNDRKAPISIYEVHLGSWRRHEDGRYLSYDELADRLLPYVKDLGFTHIECMPVSEHPFSGSWGYQPVGLYAP
TSRFGTPEDFARFVDRCHHEGIGVIIDWVPAHFPSDAHGLARFDGTALYEHEDPRLGFHRDWNTLIYNFGRREVANFLTA
NALFWLDRYHVDGLRVDAVASMLYLDYSRQPGEWIPNKHGGNENLEAIAFLRETNTALFGSHPGTTSIAEESTAFPGVSR
PVYAGGLGFGFKWNMGWMHDTLDYMQHEPIHRQHHHDRMTFGLIYAFSENFILPLSHDEVVHGKGSLIGRMPGDRWQKFA
NLRAYFTFMWTHPGKKLLFMGGEFAQEREWNHDWQLDWHHLDDPMHRGVHDLIRDLNRIYRSEPALHELDCEPEGFEWID
ASDPSISTYVYMRKGTGGARPVVVACNFTPVVRENFRIGLPNAGIWREILNSDDRRYGGSDVTNGTVTATTDEPWHGRPA
SAILRLPPLGSVVLVGEA
>Mature_737_residues
SAAADAAPWRLDDPHVIGALVAGRLADPFAILGPHQTAAGLVLRVLRPEADTAEAIDPDSGSSYGKLLKRHARGFFEGLI
SKNTAVPRYRLRFTREGDTWDEEDAYRFPSTFGDLDLYLLGEGRHQRLYEKLGAHPMACDGVDGTRFAVWAPNASRVSVV
GNFNNWDGRRHQMRLHPGIGVWEIFVPGAKPGNLYKYEIIGRNGELLPPKADPVGFRAEVPPATASVVNGLPQMEWGDGE
WVEHRIGKNDRKAPISIYEVHLGSWRRHEDGRYLSYDELADRLLPYVKDLGFTHIECMPVSEHPFSGSWGYQPVGLYAPT
SRFGTPEDFARFVDRCHHEGIGVIIDWVPAHFPSDAHGLARFDGTALYEHEDPRLGFHRDWNTLIYNFGRREVANFLTAN
ALFWLDRYHVDGLRVDAVASMLYLDYSRQPGEWIPNKHGGNENLEAIAFLRETNTALFGSHPGTTSIAEESTAFPGVSRP
VYAGGLGFGFKWNMGWMHDTLDYMQHEPIHRQHHHDRMTFGLIYAFSENFILPLSHDEVVHGKGSLIGRMPGDRWQKFAN
LRAYFTFMWTHPGKKLLFMGGEFAQEREWNHDWQLDWHHLDDPMHRGVHDLIRDLNRIYRSEPALHELDCEPEGFEWIDA
SDPSISTYVYMRKGTGGARPVVVACNFTPVVRENFRIGLPNAGIWREILNSDDRRYGGSDVTNGTVTATTDEPWHGRPAS
AILRLPPLGSVVLVGEA

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family

Homologues:

Organism=Homo sapiens, GI189458812, Length=671, Percent_Identity=26.5275707898659, Blast_Score=176, Evalue=9e-44,
Organism=Escherichia coli, GI1789839, Length=728, Percent_Identity=57.2802197802198, Blast_Score=835, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17554896, Length=653, Percent_Identity=26.1868300153139, Blast_Score=179, Evalue=3e-45,
Organism=Caenorhabditis elegans, GI32564391, Length=618, Percent_Identity=25.8899676375405, Blast_Score=159, Evalue=4e-39,
Organism=Saccharomyces cerevisiae, GI6320826, Length=674, Percent_Identity=25.5192878338279, Blast_Score=162, Evalue=2e-40,
Organism=Drosophila melanogaster, GI28573410, Length=652, Percent_Identity=27.760736196319, Blast_Score=184, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GLGB_MESSB (Q11EX1)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_675219.1
- ProteinModelPortal:   Q11EX1
- SMR:   Q11EX1
- STRING:   Q11EX1
- GeneID:   4180240
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_2677
- NMPDR:   fig|266779.1.peg.1642
- eggNOG:   COG0296
- HOGENOM:   HBG287139
- OMA:   WNEWDES
- PhylomeDB:   Q11EX1
- ProtClustDB:   PRK05402
- BioCyc:   MSP266779:MESO_2677-MONOMER
- HAMAP:   MF_00685
- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756
- Gene3D:   G3DSA:2.60.40.1180
- Gene3D:   G3DSA:3.20.20.80
- Gene3D:   G3DSA:2.60.40.10
- TIGRFAMs:   TIGR01515

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48; SSF51445 Glyco_hydro_cat; SSF81296 Ig_E-set

EC number: =2.4.1.18

Molecular weight: Translated: 83352; Mature: 83221

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: ACT_SITE 312-312 ACT_SITE 347-347 ACT_SITE 352-352 ACT_SITE 415-415 ACT_SITE 417-417 ACT_SITE 470-470 ACT_SITE 537-537 ACT_SITE 538-538

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAAADAAPWRLDDPHVIGALVAGRLADPFAILGPHQTAAGLVLRVLRPEADTAEAIDPD
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCC
SGSSYGKLLKRHARGFFEGLISKNTAVPRYRLRFTREGDTWDEEDAYRFPSTFGDLDLYL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCEEEEE
LGEGRHQRLYEKLGAHPMACDGVDGTRFAVWAPNASRVSVVGNFNNWDGRRHQMRLHPGI
ECCCHHHHHHHHHCCCCCEECCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCC
GVWEIFVPGAKPGNLYKYEIIGRNGELLPPKADPVGFRAEVPPATASVVNGLPQMEWGDG
CEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCC
EWVEHRIGKNDRKAPISIYEVHLGSWRRHEDGRYLSYDELADRLLPYVKDLGFTHIECMP
HHHHHHCCCCCCCCCEEEEEEECCCCEECCCCCEECHHHHHHHHHHHHHHCCCCEEEEEE
VSEHPFSGSWGYQPVGLYAPTSRFGTPEDFARFVDRCHHEGIGVIIDWVPAHFPSDAHGL
CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
ARFDGTALYEHEDPRLGFHRDWNTLIYNFGRREVANFLTANALFWLDRYHVDGLRVDAVA
HHCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHEEEEHHHCCCCEEHHHHH
SMLYLDYSRQPGEWIPNKHGGNENLEAIAFLRETNTALFGSHPGTTSIAEESTAFPGVSR
HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCC
PVYAGGLGFGFKWNMGWMHDTLDYMQHEPIHRQHHHDRMTFGLIYAFSENFILPLSHDEV
CEEECCCCCCEEECCCCHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCCEEEECCCCCE
VHGKGSLIGRMPGDRWQKFANLRAYFTFMWTHPGKKLLFMGGEFAQEREWNHDWQLDWHH
EECCCCEEECCCCHHHHHHHCCEEEEEEEEECCCCEEEEECCCHHHHCCCCCCCEEEHHH
LDDPMHRGVHDLIRDLNRIYRSEPALHELDCEPEGFEWIDASDPSISTYVYMRKGTGGAR
CCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCEEEEEEEECCCCCCC
PVVVACNFTPVVRENFRIGLPNAGIWREILNSDDRRYGGSDVTNGTVTATTDEPWHGRPA
EEEEEECCCHHHHCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCH
SAILRLPPLGSVVLVGEA
HHEEECCCCCCEEEEECC
>Mature Secondary Structure 
SAAADAAPWRLDDPHVIGALVAGRLADPFAILGPHQTAAGLVLRVLRPEADTAEAIDPD
CCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCCCCCCCCC
SGSSYGKLLKRHARGFFEGLISKNTAVPRYRLRFTREGDTWDEEDAYRFPSTFGDLDLYL
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCEEEEE
LGEGRHQRLYEKLGAHPMACDGVDGTRFAVWAPNASRVSVVGNFNNWDGRRHQMRLHPGI
ECCCHHHHHHHHHCCCCCEECCCCCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCC
GVWEIFVPGAKPGNLYKYEIIGRNGELLPPKADPVGFRAEVPPATASVVNGLPQMEWGDG
CEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHCCCCCCCCCCC
EWVEHRIGKNDRKAPISIYEVHLGSWRRHEDGRYLSYDELADRLLPYVKDLGFTHIECMP
HHHHHHCCCCCCCCCEEEEEEECCCCEECCCCCEECHHHHHHHHHHHHHHCCCCEEEEEE
VSEHPFSGSWGYQPVGLYAPTSRFGTPEDFARFVDRCHHEGIGVIIDWVPAHFPSDAHGL
CCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCH
ARFDGTALYEHEDPRLGFHRDWNTLIYNFGRREVANFLTANALFWLDRYHVDGLRVDAVA
HHCCCEEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHEEEEHHHCCCCEEHHHHH
SMLYLDYSRQPGEWIPNKHGGNENLEAIAFLRETNTALFGSHPGTTSIAEESTAFPGVSR
HHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCC
PVYAGGLGFGFKWNMGWMHDTLDYMQHEPIHRQHHHDRMTFGLIYAFSENFILPLSHDEV
CEEECCCCCCEEECCCCHHHHHHHHHCCCHHHHHCCCCEEEEEEEEECCCEEEECCCCCE
VHGKGSLIGRMPGDRWQKFANLRAYFTFMWTHPGKKLLFMGGEFAQEREWNHDWQLDWHH
EECCCCEEECCCCHHHHHHHCCEEEEEEEEECCCCEEEEECCCHHHHCCCCCCCEEEHHH
LDDPMHRGVHDLIRDLNRIYRSEPALHELDCEPEGFEWIDASDPSISTYVYMRKGTGGAR
CCCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCEEECCCCCCEEEEEEEECCCCCCC
PVVVACNFTPVVRENFRIGLPNAGIWREILNSDDRRYGGSDVTNGTVTATTDEPWHGRPA
EEEEEECCCHHHHCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCH
SAILRLPPLGSVVLVGEA
HHEEECCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA