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The map label for this gene is yliC [C]

Identifier: 110634971

GI number: 110634971

Start: 2846774

End: 2847721

Strand: Reverse

Name: yliC [C]

Synonym: Meso_2637

Alternate gene names: 110634971

Gene position: 2847721-2846774 (Counterclockwise)

Preceding gene: 110634972

Following gene: 110634970

Centisome position: 64.54

GC content: 54.75

Gene sequence:

>948_bases
ATGATGAGAGATTTCTTGGGCAAAATAGTCACAGCGATTGCCGCTGTGCTGGCAGCAATGCTGCTGATTTTCCTATTGAT
GAGTGTTGTCCCTGGCGATCCTGCTTCAACGTTACTTGGTCCTCAGGCATCTCCAGAGTTCGTTCGGCAGTATATCCAGC
AGATGGGGCTCGATCAGCCCGTCCATGTTCGTCTCATCCGCTTTTTTGAGAATCTTCTAACCGGAAATCTCGGAACGGAT
GTCGTCTCGGGCAGGCCCGTATGGGACATCATCGTTGAAGCGGTACCTAATACGATGTTGCTGGCCGTGTCCTCTATGGC
ATTGGCTTGTATCATCGGCATTCCCCTGGGCGTTTTTGGCGTGATGACCAAATCCCCCACGATCGATGCGGTGATTACCT
CGCTGTCGATCGTTTTTGTCTCCATGCCGAGTTTCATCGTGGGCATCGCGCTGCTGGTCATCTTCTCCAGTTGGCTGAAC
TGGCTGCCAGTTCTAGGCGCATCCGCCGATGCAAGTTTGCTGGACAAGTTCCGTGCCATGATCCTGCCGACGACCGCCTT
GGCCATAGGCTGGATCGGCATTATCGGCCGGCTGGTACGCAGTTCGATGCTGGAGGCGCTGTCCCAGAACTATGTCCGGA
CCGCCCGCGCCTACGGTCTGAGAAAGTCGCTGGTATTCTACAAATACGCGCTTCGAAACGCGATCATCCCCACAATAACC
GTCGTCGGCATGGGCTTTGCCCGGCTGATCGGCGGTGCGGTTCTGGTTGAAGTGCTATTTGCCCGCCAGGGCCTGGGCAC
CGTCATCTACGACGCGTTGATATCGAGAAACTTTTCGGTTCTTCAAGGGAGCATTTTTGTCGTCGTGGTCCTGTTCGTCT
TCATCAACTTCATAACCGAATATGTCTTCCGGATCGCCGATCCCCGGTTCAGCAAGGATGCCGCCTGA

Upstream 100 bases:

>100_bases
CGGAATAGCATCATTTCGAGAGCATGGCCGCTCAAGCTCTCCCACAACTGTTGTACGGCCGCAAAGAAGCAATTTCCGCT
TGCGGAGAATGCGGGACGCG

Downstream 100 bases:

>100_bases
TGCAGCGTCTGACCAGGTTCGCTGGGAAGATCGGGACTTCGGGCACCTTCGGCTTCGCCGGAGTAGCGATCCTGCTTCTG
ACGGCTATCATATCGCCGGC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MMRDFLGKIVTAIAAVLAAMLLIFLLMSVVPGDPASTLLGPQASPEFVRQYIQQMGLDQPVHVRLIRFFENLLTGNLGTD
VVSGRPVWDIIVEAVPNTMLLAVSSMALACIIGIPLGVFGVMTKSPTIDAVITSLSIVFVSMPSFIVGIALLVIFSSWLN
WLPVLGASADASLLDKFRAMILPTTALAIGWIGIIGRLVRSSMLEALSQNYVRTARAYGLRKSLVFYKYALRNAIIPTIT
VVGMGFARLIGGAVLVEVLFARQGLGTVIYDALISRNFSVLQGSIFVVVVLFVFINFITEYVFRIADPRFSKDAA

Sequences:

>Translated_315_residues
MMRDFLGKIVTAIAAVLAAMLLIFLLMSVVPGDPASTLLGPQASPEFVRQYIQQMGLDQPVHVRLIRFFENLLTGNLGTD
VVSGRPVWDIIVEAVPNTMLLAVSSMALACIIGIPLGVFGVMTKSPTIDAVITSLSIVFVSMPSFIVGIALLVIFSSWLN
WLPVLGASADASLLDKFRAMILPTTALAIGWIGIIGRLVRSSMLEALSQNYVRTARAYGLRKSLVFYKYALRNAIIPTIT
VVGMGFARLIGGAVLVEVLFARQGLGTVIYDALISRNFSVLQGSIFVVVVLFVFINFITEYVFRIADPRFSKDAA
>Mature_315_residues
MMRDFLGKIVTAIAAVLAAMLLIFLLMSVVPGDPASTLLGPQASPEFVRQYIQQMGLDQPVHVRLIRFFENLLTGNLGTD
VVSGRPVWDIIVEAVPNTMLLAVSSMALACIIGIPLGVFGVMTKSPTIDAVITSLSIVFVSMPSFIVGIALLVIFSSWLN
WLPVLGASADASLLDKFRAMILPTTALAIGWIGIIGRLVRSSMLEALSQNYVRTARAYGLRKSLVFYKYALRNAIIPTIT
VVGMGFARLIGGAVLVEVLFARQGLGTVIYDALISRNFSVLQGSIFVVVVLFVFINFITEYVFRIADPRFSKDAA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=31.8181818181818, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=30.7692307692308, Blast_Score=177, Evalue=8e-46,
Organism=Escherichia coli, GI1787761, Length=299, Percent_Identity=36.4548494983278, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789888, Length=316, Percent_Identity=32.2784810126582, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=27.3311897106109, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1788504, Length=285, Percent_Identity=25.6140350877193, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1787550, Length=270, Percent_Identity=27.4074074074074, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34163; Mature: 34163

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCCCC
>Mature Secondary Structure
MMRDFLGKIVTAIAAVLAAMLLIFLLMSVVPGDPASTLLGPQASPEFVRQYIQQMGLDQP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCC
VHVRLIRFFENLLTGNLGTDVVSGRPVWDIIVEAVPNTMLLAVSSMALACIIGIPLGVFG
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VMTKSPTIDAVITSLSIVFVSMPSFIVGIALLVIFSSWLNWLPVLGASADASLLDKFRAM
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
ILPTTALAIGWIGIIGRLVRSSMLEALSQNYVRTARAYGLRKSLVFYKYALRNAIIPTIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVGMGFARLIGGAVLVEVLFARQGLGTVIYDALISRNFSVLQGSIFVVVVLFVFINFITE
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
YVFRIADPRFSKDAA
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]