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The map label for this gene is ddpA [H]

Identifier: 110634957

GI number: 110634957

Start: 2827972

End: 2829525

Strand: Reverse

Name: ddpA [H]

Synonym: Meso_2622

Alternate gene names: 110634957

Gene position: 2829525-2827972 (Counterclockwise)

Preceding gene: 110634958

Following gene: 110634956

Centisome position: 64.13

GC content: 59.46

Gene sequence:

>1554_bases
ATGTTAACAAGTACGAACTTTACCCGCCGATCCATTCTCGCTGGCATTGCTGGCCTCTCCGGCACGGCAGCGCTGCCCGC
TGGTTTCGCATGGGCGCAGGATCAGCGGACCCTTTCCATCCGCATCAGCCGCGAAATTCAGAACCTTGACCCCCCGTTCA
TGGCGGGCACCACCGACAGCAATATCATCCGCGCCGTATTCCAGCGCTTGGTGAGCTATATTCCCAACTCCTACGAATAT
GAGTTGGACGCGGCCGAGAGCATCGAGCAGGTCTCCCCACTCCAGATCGATTTTACCCTGAAAAAGGGCCAGATGTTCAC
CGATGGCTACGGCGAAATGACAGCCGATGACGTCAAATTCTCCTTCGAGCGATATATCACCCCCGATGCGGACGGCAGAG
TGTCGAGCTACAAAGAGGACTGGTCGGCGCTGGTGGAAGTGCAGGTGCACGACACCTATTCGGGCAGCATCATCCTGTCT
AAGCCCTCGCCGAGCATCTGGGGGGTCATTTTCACCGGCTCGTCCGGTGCGATCCAGTCGCGCAAGGCCGTCGCCGCGTT
AGGCAAGGAGCACAGCCGCAAGCCGATCGGCTCGGGCCCCTATATGGTGTCGGCTTATGAGGACCATCGCGGCGTGACCC
TGGTGCGCAATCCAGAATTCACGGCCTATACGCCCGATTTCGAAACCTGCAACCTGGTCTATATAGCCAACCAGAAGACG
GCAGAGGTGGCGCTACGGGCCGGCGAAATCCAGTTCACCGAATTGTCGGTCGATTCCGCGGACGAGATGGCCGGCATCGA
CGGCGTTGTGGTGGATAAGCGCCCCGGCCAGCGCTTCATCTGGCTGGGCATGAACATGCAGAAGGCGCCGTTGGACAAAC
TGGCCGTCCGCCAGGCGATCCGCGCCGCTATCGACGTCGAGCAGATGGTGCTGGCGGGCTATCAGGGCAATGCCCAGCGT
CTCAACGCCATGATCCCGCCCGGCCTGCTCGGCCACTGGGCCGATGCGCCGGTCTATCAGCGTAATGTCGATGAGGCCCG
CCAATTGCTGGCCTCGGCCGGCGTAGCGCTGCCGCTGACGCTCAAGCTGACCATTCTCAATGAGCCTGCCTTCCAGAACA
TGGGGCTGGTGGCGCAGGCCCTGCTGCAGGAAGTCGGTATCAATATCGAAATCGATCAGCGCGAAGCCGGCACCTTCTGG
TCTTCGGGCAAAGGGGAATCGGGCGAGCAACTCGAACTGTTCATCCTTCGCTTCAACGCCAATCCGGACCCCACTTACAA
TGCCCGCTGGTTTCTGCCGAACCAGATCGGCGACTGGAACTGGCAGCGTTGGGATAGCCCGGAATTTGCCCGCATCCAGG
AAGAAAGTGGTCGTAATCTCGACCGCGAAAGCCGTGTCAAGCAGATCATCGAATTGCAAAAGCTTATGGATGAAACAGCG
TCGATGGTCTGGTTGACCAATGACGTATTCGCCTTGGGCTATCAGGCATCGGTGCAGCCAGCCGTCCTGCCCGACGGCAA
TAACTGGCAGTTCAACTACTTCAAGGCGGTCTAG

Upstream 100 bases:

>100_bases
GCCTTTTTCCCTATTCCCTGGAGCTTTCTGGTGCGCACCGGAAAGCCGAAGTTCCTGCCGAGTAGACCACGATATCAAAC
AGATCACCGAGGCGTAGGAC

Downstream 100 bases:

>100_bases
CCGCACCACTACCTGCTCCCGCCGACAGCTACGGCGGGAGCATTTTGTTGCCATTAACAGGCGCCGCATTTAGGAGCAAG
AAATGACCGAAAAGCCGGTG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MLTSTNFTRRSILAGIAGLSGTAALPAGFAWAQDQRTLSIRISREIQNLDPPFMAGTTDSNIIRAVFQRLVSYIPNSYEY
ELDAAESIEQVSPLQIDFTLKKGQMFTDGYGEMTADDVKFSFERYITPDADGRVSSYKEDWSALVEVQVHDTYSGSIILS
KPSPSIWGVIFTGSSGAIQSRKAVAALGKEHSRKPIGSGPYMVSAYEDHRGVTLVRNPEFTAYTPDFETCNLVYIANQKT
AEVALRAGEIQFTELSVDSADEMAGIDGVVVDKRPGQRFIWLGMNMQKAPLDKLAVRQAIRAAIDVEQMVLAGYQGNAQR
LNAMIPPGLLGHWADAPVYQRNVDEARQLLASAGVALPLTLKLTILNEPAFQNMGLVAQALLQEVGINIEIDQREAGTFW
SSGKGESGEQLELFILRFNANPDPTYNARWFLPNQIGDWNWQRWDSPEFARIQEESGRNLDRESRVKQIIELQKLMDETA
SMVWLTNDVFALGYQASVQPAVLPDGNNWQFNYFKAV

Sequences:

>Translated_517_residues
MLTSTNFTRRSILAGIAGLSGTAALPAGFAWAQDQRTLSIRISREIQNLDPPFMAGTTDSNIIRAVFQRLVSYIPNSYEY
ELDAAESIEQVSPLQIDFTLKKGQMFTDGYGEMTADDVKFSFERYITPDADGRVSSYKEDWSALVEVQVHDTYSGSIILS
KPSPSIWGVIFTGSSGAIQSRKAVAALGKEHSRKPIGSGPYMVSAYEDHRGVTLVRNPEFTAYTPDFETCNLVYIANQKT
AEVALRAGEIQFTELSVDSADEMAGIDGVVVDKRPGQRFIWLGMNMQKAPLDKLAVRQAIRAAIDVEQMVLAGYQGNAQR
LNAMIPPGLLGHWADAPVYQRNVDEARQLLASAGVALPLTLKLTILNEPAFQNMGLVAQALLQEVGINIEIDQREAGTFW
SSGKGESGEQLELFILRFNANPDPTYNARWFLPNQIGDWNWQRWDSPEFARIQEESGRNLDRESRVKQIIELQKLMDETA
SMVWLTNDVFALGYQASVQPAVLPDGNNWQFNYFKAV
>Mature_517_residues
MLTSTNFTRRSILAGIAGLSGTAALPAGFAWAQDQRTLSIRISREIQNLDPPFMAGTTDSNIIRAVFQRLVSYIPNSYEY
ELDAAESIEQVSPLQIDFTLKKGQMFTDGYGEMTADDVKFSFERYITPDADGRVSSYKEDWSALVEVQVHDTYSGSIILS
KPSPSIWGVIFTGSSGAIQSRKAVAALGKEHSRKPIGSGPYMVSAYEDHRGVTLVRNPEFTAYTPDFETCNLVYIANQKT
AEVALRAGEIQFTELSVDSADEMAGIDGVVVDKRPGQRFIWLGMNMQKAPLDKLAVRQAIRAAIDVEQMVLAGYQGNAQR
LNAMIPPGLLGHWADAPVYQRNVDEARQLLASAGVALPLTLKLTILNEPAFQNMGLVAQALLQEVGINIEIDQREAGTFW
SSGKGESGEQLELFILRFNANPDPTYNARWFLPNQIGDWNWQRWDSPEFARIQEESGRNLDRESRVKQIIELQKLMDETA
SMVWLTNDVFALGYQASVQPAVLPDGNNWQFNYFKAV

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=477, Percent_Identity=25.7861635220126, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1789966, Length=472, Percent_Identity=24.1525423728814, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787495, Length=526, Percent_Identity=24.7148288973384, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787052, Length=446, Percent_Identity=24.2152466367713, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787551, Length=322, Percent_Identity=25.1552795031056, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57472; Mature: 57472

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTSTNFTRRSILAGIAGLSGTAALPAGFAWAQDQRTLSIRISREIQNLDPPFMAGTTDS
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEEEEEEHHHCCCCCEEECCCCH
NIIRAVFQRLVSYIPNSYEYELDAAESIEQVSPLQIDFTLKKGQMFTDGYGEMTADDVKF
HHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCHHEE
SFERYITPDADGRVSSYKEDWSALVEVQVHDTYSGSIILSKPSPSIWGVIFTGSSGAIQS
EHHEEECCCCCCCCHHHHHCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCHH
RKAVAALGKEHSRKPIGSGPYMVSAYEDHRGVTLVRNPEFTAYTPDFETCNLVYIANQKT
HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCEEECCCCCCEEEEEEECCCC
AEVALRAGEIQFTELSVDSADEMAGIDGVVVDKRPGQRFIWLGMNMQKAPLDKLAVRQAI
EEEEEECCCEEEEEECCCCCHHHCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHH
RAAIDVEQMVLAGYQGNAQRLNAMIPPGLLGHWADAPVYQRNVDEARQLLASAGVALPLT
HHHHCHHHHHHCCCCCCHHHEEECCCCCHHCCCCCCCHHHCCHHHHHHHHHHCCCEEEEE
LKLTILNEPAFQNMGLVAQALLQEVGINIEIDQREAGTFWSSGKGESGEQLELFILRFNA
EEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECC
NPDPTYNARWFLPNQIGDWNWQRWDSPEFARIQEESGRNLDRESRVKQIIELQKLMDETA
CCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
SMVWLTNDVFALGYQASVQPAVLPDGNNWQFNYFKAV
CEEEEECCEEEECEECCCCCEECCCCCCCEEEEEEEC
>Mature Secondary Structure
MLTSTNFTRRSILAGIAGLSGTAALPAGFAWAQDQRTLSIRISREIQNLDPPFMAGTTDS
CCCCCCCHHHHHHHHHCCCCCCCCCCCCCEECCCCEEEEEEEEEHHHCCCCCEEECCCCH
NIIRAVFQRLVSYIPNSYEYELDAAESIEQVSPLQIDFTLKKGQMFTDGYGEMTADDVKF
HHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCCEEEEEEEECCCEEECCCCCCCCCHHEE
SFERYITPDADGRVSSYKEDWSALVEVQVHDTYSGSIILSKPSPSIWGVIFTGSSGAIQS
EHHEEECCCCCCCCHHHHHCCEEEEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCHH
RKAVAALGKEHSRKPIGSGPYMVSAYEDHRGVTLVRNPEFTAYTPDFETCNLVYIANQKT
HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEECCCCEEECCCCCCEEEEEEECCCC
AEVALRAGEIQFTELSVDSADEMAGIDGVVVDKRPGQRFIWLGMNMQKAPLDKLAVRQAI
EEEEEECCCEEEEEECCCCCHHHCCCCEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHH
RAAIDVEQMVLAGYQGNAQRLNAMIPPGLLGHWADAPVYQRNVDEARQLLASAGVALPLT
HHHHCHHHHHHCCCCCCHHHEEECCCCCHHCCCCCCCHHHCCHHHHHHHHHHCCCEEEEE
LKLTILNEPAFQNMGLVAQALLQEVGINIEIDQREAGTFWSSGKGESGEQLELFILRFNA
EEEEEECCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECC
NPDPTYNARWFLPNQIGDWNWQRWDSPEFARIQEESGRNLDRESRVKQIIELQKLMDETA
CCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC
SMVWLTNDVFALGYQASVQPAVLPDGNNWQFNYFKAV
CEEEEECCEEEECEECCCCCEECCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]