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The map label for this gene is yjcF [C]

Identifier: 110634947

GI number: 110634947

Start: 2815031

End: 2815810

Strand: Reverse

Name: yjcF [C]

Synonym: Meso_2608

Alternate gene names: 110634947

Gene position: 2815810-2815031 (Counterclockwise)

Preceding gene: 110634952

Following gene: 110634942

Centisome position: 63.82

GC content: 58.97

Gene sequence:

>780_bases
ATGTCTGCTTTTGCTCAGAGTGGCGGCAGGATCTGCCATCCGGTCATATCGCGGCCATTCACCTCCCTGCCCTCGATAGA
CCGTTCAAAGCCGCTCCCGGTCGGGGATGTGCAAGCGTTTCTCGCCGGCGAGACAAAGGACTGCCCTGGCTGTGACCTGA
AAGGGGCACAATTGCAACGACGCGAACTCTCAGGCGCGGATCTTCGCGGCGCGGACCTGTCAGGTGCGTCGCTGCATCGT
GCGTCGCTCGCGGGAGCACGTCTCGACGCCGCAAACCTTTCTGGCGCCAATCTGAACCTGACGGATCTCAAGAACGCCTC
GCTGATTGAAGCAAACCTCAATCAGGCGCTGCTCTATAGTGCCGATCTGAGTCGCGCGGTCCTCACGCGCGCGGATCTCA
CTTGGGCCCGCCTGCAGCATGCTCGCCTGACACAGGCGCAATTACAGGAAACCAAACTCGTCCACGCCATGGCGATGCAA
GCAAATTTCACCGGTGCTGACCTGCGAAAGGCCGATCTGCAGCTATCCAACCTGCAAGGTGCCAATCTCCAGCGGACGGA
CATGCGAAGCGCGGTGCTGACGAATGGAGGGTTCATCGAGGTGAATTTCACGTCAGCTGACCTCAGCCTCGTCAACGATT
TCAATGCTGATTTCATGTCCGCCAATTTTACCGATACCCGGATGGTCAACGCGGACCTTCGAGGTATGCGGCAGGACGGC
GCCACATTTGCTTGCGTGCGGATTGAAAACGCACTTATGGGCCCAGCGACGGCAAACTGA

Upstream 100 bases:

>100_bases
TGGACCGCCCCAGAAACTCAGATAAGATGCGATGTACTGAGAGGCGCAAACTATTTTGACCCGTTTAATCCTCACCGTAT
TGGCTTTGATCGCCGCTTGC

Downstream 100 bases:

>100_bases
TCCCTCCAGCCCACTTAGGGCTGCTGCTTTAACTCGAACCGCGTCTGGCTAACAAAGAGGCCGGGCTGCACATTGCCATA
CTCATCCGTGAAGGACTGTC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MSAFAQSGGRICHPVISRPFTSLPSIDRSKPLPVGDVQAFLAGETKDCPGCDLKGAQLQRRELSGADLRGADLSGASLHR
ASLAGARLDAANLSGANLNLTDLKNASLIEANLNQALLYSADLSRAVLTRADLTWARLQHARLTQAQLQETKLVHAMAMQ
ANFTGADLRKADLQLSNLQGANLQRTDMRSAVLTNGGFIEVNFTSADLSLVNDFNADFMSANFTDTRMVNADLRGMRQDG
ATFACVRIENALMGPATAN

Sequences:

>Translated_259_residues
MSAFAQSGGRICHPVISRPFTSLPSIDRSKPLPVGDVQAFLAGETKDCPGCDLKGAQLQRRELSGADLRGADLSGASLHR
ASLAGARLDAANLSGANLNLTDLKNASLIEANLNQALLYSADLSRAVLTRADLTWARLQHARLTQAQLQETKLVHAMAMQ
ANFTGADLRKADLQLSNLQGANLQRTDMRSAVLTNGGFIEVNFTSADLSLVNDFNADFMSANFTDTRMVNADLRGMRQDG
ATFACVRIENALMGPATAN
>Mature_258_residues
SAFAQSGGRICHPVISRPFTSLPSIDRSKPLPVGDVQAFLAGETKDCPGCDLKGAQLQRRELSGADLRGADLSGASLHRA
SLAGARLDAANLSGANLNLTDLKNASLIEANLNQALLYSADLSRAVLTRADLTWARLQHARLTQAQLQETKLVHAMAMQA
NFTGADLRKADLQLSNLQGANLQRTDMRSAVLTNGGFIEVNFTSADLSLVNDFNADFMSANFTDTRMVNADLRGMRQDGA
TFACVRIENALMGPATAN

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=172, Percent_Identity=31.9767441860465, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221377802, Length=172, Percent_Identity=27.3255813953488, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 27676; Mature: 27544

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFAQSGGRICHPVISRPFTSLPSIDRSKPLPVGDVQAFLAGETKDCPGCDLKGAQLQR
CCCCHHCCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHH
RELSGADLRGADLSGASLHRASLAGARLDAANLSGANLNLTDLKNASLIEANLNQALLYS
HHCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCHHCCCCCEEEECCCCEEEEEC
ADLSRAVLTRADLTWARLQHARLTQAQLQETKLVHAMAMQANFTGADLRKADLQLSNLQG
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEECCCC
ANLQRTDMRSAVLTNGGFIEVNFTSADLSLVNDFNADFMSANFTDTRMVNADLRGMRQDG
CCCCHHHHHHHHCCCCCEEEEEECCCCEEEHHCCCCCCEECCCCCCEEECHHHHHHHCCC
ATFACVRIENALMGPATAN
CEEEEEEECCHHCCCCCCC
>Mature Secondary Structure 
SAFAQSGGRICHPVISRPFTSLPSIDRSKPLPVGDVQAFLAGETKDCPGCDLKGAQLQR
CCCHHCCCCEEHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHH
RELSGADLRGADLSGASLHRASLAGARLDAANLSGANLNLTDLKNASLIEANLNQALLYS
HHCCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCCCHHCCCCCEEEECCCCEEEEEC
ADLSRAVLTRADLTWARLQHARLTQAQLQETKLVHAMAMQANFTGADLRKADLQLSNLQG
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCEEECCCC
ANLQRTDMRSAVLTNGGFIEVNFTSADLSLVNDFNADFMSANFTDTRMVNADLRGMRQDG
CCCCHHHHHHHHCCCCCEEEEEECCCCEEEHHCCCCCCEECCCCCCEEECHHHHHHHCCC
ATFACVRIENALMGPATAN
CEEEEEEECCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA