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The map label for this gene is yeaM [H]

Identifier: 110634879

GI number: 110634879

Start: 2718021

End: 2718797

Strand: Direct

Name: yeaM [H]

Synonym: Meso_2538

Alternate gene names: 110634879

Gene position: 2718021-2718797 (Clockwise)

Preceding gene: 110634872

Following gene: 110634890

Centisome position: 61.6

GC content: 58.04

Gene sequence:

>777_bases
ATGTCAGCGTGGCGAACGGTTGATGTTCCGGAGATAGAAGCTCTCTCTCGATCCGTCTTCCTACGGTCGCAAAAGCTTCC
CGCCCGGCATGGTTTTCCCATGCATACGCATCCATGGAATCAGTTCGTCTATGCGACGACGGGCACGCTGATGGTGACGA
TCGAGCAAGCTCGGTACGTCATCACACCAGAGCAGGCAATCTGGATTCCGACCGGAGTCCGCCATACCACAACGGCATTG
AGCGATGTGGAATTTCGCAACCTCTATGTCGAAGACCTGCCGAATCTGAATATGCCGGCTGACTGCAGCGTGCTTGCCGT
TTCCACATTGTTGCGGTCTTTGATCCTTGAGCTTGCGGAGGTGGAGCAGAAGTCCGATCATTCCGAGTACCGGGACCATC
TGGATGCCGTTATCCTTGTTCAGATGAGCCGGCTTCGAAAGCTGGATTTCTTCCTGCCGTGGCCGCACAGCAGCCATCTC
CGGGAAATCTGCGAGGTCCTTTACGCGCATCCTGACGAACCGCGCGACATCACGGAATGGGCGTCACGCGCCGGAATGTC
GGCGCGAACGCTTTCCCGCCATTTCAATGCGGAGACCGGAATGAGTCTGCGGGTGTGGCGCCATCGCCTGCGCGTGTTTC
GAGCCGTGGAACTTCTGAGCGCCCATTGGCGCGTGACCGACATCGCGCTCGAGCTGGGATTCAGCTCGGCCTCGGCTTTC
ACCTATGCCTTTCGCACGGAGATGGGCTGCTCGCCAACGGAATGGATCGCACGATAA

Upstream 100 bases:

>100_bases
CGATGCCGCGAACAATAGGGTTTGTCGAGCGGCTTCGCTTTCGATAGCGTGCCAAGTTATATCGATGAGCGGACAATCTT
TCGAGTGCGGGAATAATTGG

Downstream 100 bases:

>100_bases
TGCACGTTGAATGCCGCCGGCCCATTCACTACCGAACCTCGCCGTCACGCGGCAGGATAACTGGCGGCTCGAAAATGCCA
ACCGGCGGAGGCGCCCCTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MSAWRTVDVPEIEALSRSVFLRSQKLPARHGFPMHTHPWNQFVYATTGTLMVTIEQARYVITPEQAIWIPTGVRHTTTAL
SDVEFRNLYVEDLPNLNMPADCSVLAVSTLLRSLILELAEVEQKSDHSEYRDHLDAVILVQMSRLRKLDFFLPWPHSSHL
REICEVLYAHPDEPRDITEWASRAGMSARTLSRHFNAETGMSLRVWRHRLRVFRAVELLSAHWRVTDIALELGFSSASAF
TYAFRTEMGCSPTEWIAR

Sequences:

>Translated_258_residues
MSAWRTVDVPEIEALSRSVFLRSQKLPARHGFPMHTHPWNQFVYATTGTLMVTIEQARYVITPEQAIWIPTGVRHTTTAL
SDVEFRNLYVEDLPNLNMPADCSVLAVSTLLRSLILELAEVEQKSDHSEYRDHLDAVILVQMSRLRKLDFFLPWPHSSHL
REICEVLYAHPDEPRDITEWASRAGMSARTLSRHFNAETGMSLRVWRHRLRVFRAVELLSAHWRVTDIALELGFSSASAF
TYAFRTEMGCSPTEWIAR
>Mature_257_residues
SAWRTVDVPEIEALSRSVFLRSQKLPARHGFPMHTHPWNQFVYATTGTLMVTIEQARYVITPEQAIWIPTGVRHTTTALS
DVEFRNLYVEDLPNLNMPADCSVLAVSTLLRSLILELAEVEQKSDHSEYRDHLDAVILVQMSRLRKLDFFLPWPHSSHLR
EICEVLYAHPDEPRDITEWASRAGMSARTLSRHFNAETGMSLRVWRHRLRVFRAVELLSAHWRVTDIALELGFSSASAFT
YAFRTEMGCSPTEWIAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=226, Percent_Identity=30.9734513274336, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29732; Mature: 29601

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAWRTVDVPEIEALSRSVFLRSQKLPARHGFPMHTHPWNQFVYATTGTLMVTIEQARYV
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCEEE
ITPEQAIWIPTGVRHTTTALSDVEFRNLYVEDLPNLNMPADCSVLAVSTLLRSLILELAE
ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VEQKSDHSEYRDHLDAVILVQMSRLRKLDFFLPWPHSSHLREICEVLYAHPDEPRDITEW
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCCCCHHHHH
ASRAGMSARTLSRHFNAETGMSLRVWRHRLRVFRAVELLSAHWRVTDIALELGFSSASAF
HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEEHHEECCCCCCHHE
TYAFRTEMGCSPTEWIAR
EEEEHHCCCCCHHHHHCC
>Mature Secondary Structure 
SAWRTVDVPEIEALSRSVFLRSQKLPARHGFPMHTHPWNQFVYATTGTLMVTIEQARYV
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCEEE
ITPEQAIWIPTGVRHTTTALSDVEFRNLYVEDLPNLNMPADCSVLAVSTLLRSLILELAE
ECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
VEQKSDHSEYRDHLDAVILVQMSRLRKLDFFLPWPHSSHLREICEVLYAHPDEPRDITEW
HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHCCCCCCCHHHHH
ASRAGMSARTLSRHFNAETGMSLRVWRHRLRVFRAVELLSAHWRVTDIALELGFSSASAF
HHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHEEHHEECCCCCCHHE
TYAFRTEMGCSPTEWIAR
EEEEHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]