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The map label for this gene is hycF [C]

Identifier: 110634782

GI number: 110634782

Start: 2616915

End: 2618957

Strand: Reverse

Name: hycF [C]

Synonym: Meso_2441

Alternate gene names: 110634782

Gene position: 2618957-2616915 (Counterclockwise)

Preceding gene: 110634793

Following gene: 110634780

Centisome position: 59.35

GC content: 64.71

Gene sequence:

>2043_bases
ATGACCTTGGGCCGATCACGTACGGTTTTCGTCTGTTCCTGTGAACGGAGCATGCCGAGCTATGGCGAAAGCGTGGCTCG
TGGATGCAAAAACGTTTCTATCCAATCGGGTGACCAGTTCTGCGGCGCCGAGCTTGATCGCGTTCGCAGCGCATTGAGTG
CGGGTGAAGCCGTCACGATAGCCTGTACGCAGCAGGCGCCGCTTTTCCGCGAAGTCGCGGAGGACGCCGCCTTTGCTGGC
GATCTGGTGTTCGCGAATATCCGCGAAACGGCGGGTTGGTCGCGCGAAGCCTCGTCCGCCGGTGCGAAGGCGGCAGCGCT
GGTCGCAATGGCGGCGGTACCTGTTGCACCGCCCGCACTCGTAACGCTTGCGAGCAAGGGCGTGGTGCTGGTCTATGGCC
GCGACGAAGTGGCAATCGAGGCCGGCCGGCAGCTCGACGATGAACTCGACGTGACCGTTCTGCTGACGCGCCCGGAAGAC
GTAGCGCCAAGCCGCGTATGGAATTTCCCGGTCGTGCAGGGAACGATCCGCAATGCGCGCGGCCATCTCGGCGCCTTCGA
GCTGACGGTCGACGACTTCGCGGTACCGGCGCCTTCATCGCGCGATCGCCTGCGCTTCGGGCTTTCGCGCGACGGCGCGG
TTTCGAAGGCGGACATCATCCTCGACCTTTCCGGCGGCGTGCCGCTCTTTCCGGCCCATGATCTGCGCGAGGGCTATTTG
AGGGCCGACCCTGCCGACCGTGCTGGGGTCGCCATCGCGATCGCCAAGGCCACCGGTCTCGTGGGCGAGTTCGAGAAACC
GCGCTATGTCGATTTCCACGCCGATCTCTGTGCCCATTCGCGCTCGCGCATCACCGGGTGCACGCGCTGCCTAGACTTGT
GCCCGACGGGTGCGATTACGCCCGCAGGCAACCATGTCGCTATCGACGCGGAAATCTGTGCCGGCTGCGGCAACTGCGCG
GCGGTCTGCCCGACCGGCGCTGCCGCCTATGCCATCCCGGATGCCGAGACGCTGCTGCAGCGGTTGCGCACCGTTCTTGT
GACCTATCGGGAGGCAGGCGGCAGCGAGCCGATCGTGCTGTTCCACGATGCTGCGCATGGCGAGCCGCTCATCGATGCCC
TCGCGCGCTTCGGGCCGGGGCTGCCGGCGAATGTTCTGCCCGTGGCGGTGAACGAGATAACGCAGTTGGGCGTGGAGGCG
TGGACTGCGCCTGTTGCCTGGGGCGCCGTGGCGGTCCGGGCTCTCTGCTCGGCAAAGCCGAAGCATGAACTCACCGGAGT
GGACAGGAACGTCTCGATCGCAAACCTTCTTGGCCAGTCGCTTGGCTATGGAGCGGATGTCTGCGGGGTGATCGAGGCGG
ACGATCCGGATATTCTCAGATCGGCGCTCGACGGGGTGAAGCCGGGCGCGACAACGCGCAAGCCCGCGAGTTTTCTGCCG
CTGGGCACGAAACGCAGCCTGCTGCGAAGCACGATGGTCGAGCTGCATCGTGCAGCACCTGCGCCGGTCGATTGCGTCGC
CATGCCGGCGGCTGCGCCGTTCGGCGGGATCGAGGTCGATGTCGAGGGCTGCACGCTGTGCCTGTCATGCGTGTCGGCCT
GTCCGACCGGCGCGCTTTCTGACAGCGAAGACCGGCCCGCGTTGTATTTTTCCGAGAGCGCCTGCGTCCAATGTGGCCTG
TGTGCAGCAACCTGTCCGGAACAGGTCATCACCTTGGTGCCCCAGGTGGATTTCCAGGCATGGAACGCCCCGCGCCGCGC
TGTGAAGGAAGAGGAACCCTATAATTGTATCGCTTGCGGCAAGGCGTTCGGCACCCGCAGCACGATCGAGCGGATCGTCG
CCAAGCTCGAAGGAAAGCACTGGATGTTCGCGGGGGAGAATGCAAAGCGGCTGGATTTGGTCCGGATGTGCGACAATTGC
CGCGTCGACGCCGTGATGAATGAAGGGTTCGATCCCTACCAGGCTTCACCCCGCCCGGCGCCGCGAACGACGGAAGATTA
TCTCCAGGCGCGCGATACCCCTGACAAAAACAAGACCGTGTGA

Upstream 100 bases:

>100_bases
ATGCCGGTCCATTTCTGATGACGGCGACCGTTTTGCCTTTATAATGCGTCTAAAGCCATGGCGCTACCGAAACGGGCGTT
GCAGCGCCGCGGGAGGCAGA

Downstream 100 bases:

>100_bases
GCTCAGTCGTCGCGGGTCTCAGCCTGCAGGAAGCGGATCAGCGCCGCCCGATCCTCTGGATCGCTGATTGTCTGCTCGGG
CATTTTGGTGCCCGGCGTGA

Product: 4Fe-4S ferredoxin, iron-sulfur binding

Products: CO2; H2; oxidized ferredoxin + [C]

Alternate protein names: Methyl-Viologen-Reducing Hydrogenase Delta Subunit; 4Fe-4S Ferredoxin; 4fe-4S Ferredoxin; Polyferredoxins

Number of amino acids: Translated: 680; Mature: 679

Protein sequence:

>680_residues
MTLGRSRTVFVCSCERSMPSYGESVARGCKNVSIQSGDQFCGAELDRVRSALSAGEAVTIACTQQAPLFREVAEDAAFAG
DLVFANIRETAGWSREASSAGAKAAALVAMAAVPVAPPALVTLASKGVVLVYGRDEVAIEAGRQLDDELDVTVLLTRPED
VAPSRVWNFPVVQGTIRNARGHLGAFELTVDDFAVPAPSSRDRLRFGLSRDGAVSKADIILDLSGGVPLFPAHDLREGYL
RADPADRAGVAIAIAKATGLVGEFEKPRYVDFHADLCAHSRSRITGCTRCLDLCPTGAITPAGNHVAIDAEICAGCGNCA
AVCPTGAAAYAIPDAETLLQRLRTVLVTYREAGGSEPIVLFHDAAHGEPLIDALARFGPGLPANVLPVAVNEITQLGVEA
WTAPVAWGAVAVRALCSAKPKHELTGVDRNVSIANLLGQSLGYGADVCGVIEADDPDILRSALDGVKPGATTRKPASFLP
LGTKRSLLRSTMVELHRAAPAPVDCVAMPAAAPFGGIEVDVEGCTLCLSCVSACPTGALSDSEDRPALYFSESACVQCGL
CAATCPEQVITLVPQVDFQAWNAPRRAVKEEEPYNCIACGKAFGTRSTIERIVAKLEGKHWMFAGENAKRLDLVRMCDNC
RVDAVMNEGFDPYQASPRPAPRTTEDYLQARDTPDKNKTV

Sequences:

>Translated_680_residues
MTLGRSRTVFVCSCERSMPSYGESVARGCKNVSIQSGDQFCGAELDRVRSALSAGEAVTIACTQQAPLFREVAEDAAFAG
DLVFANIRETAGWSREASSAGAKAAALVAMAAVPVAPPALVTLASKGVVLVYGRDEVAIEAGRQLDDELDVTVLLTRPED
VAPSRVWNFPVVQGTIRNARGHLGAFELTVDDFAVPAPSSRDRLRFGLSRDGAVSKADIILDLSGGVPLFPAHDLREGYL
RADPADRAGVAIAIAKATGLVGEFEKPRYVDFHADLCAHSRSRITGCTRCLDLCPTGAITPAGNHVAIDAEICAGCGNCA
AVCPTGAAAYAIPDAETLLQRLRTVLVTYREAGGSEPIVLFHDAAHGEPLIDALARFGPGLPANVLPVAVNEITQLGVEA
WTAPVAWGAVAVRALCSAKPKHELTGVDRNVSIANLLGQSLGYGADVCGVIEADDPDILRSALDGVKPGATTRKPASFLP
LGTKRSLLRSTMVELHRAAPAPVDCVAMPAAAPFGGIEVDVEGCTLCLSCVSACPTGALSDSEDRPALYFSESACVQCGL
CAATCPEQVITLVPQVDFQAWNAPRRAVKEEEPYNCIACGKAFGTRSTIERIVAKLEGKHWMFAGENAKRLDLVRMCDNC
RVDAVMNEGFDPYQASPRPAPRTTEDYLQARDTPDKNKTV
>Mature_679_residues
TLGRSRTVFVCSCERSMPSYGESVARGCKNVSIQSGDQFCGAELDRVRSALSAGEAVTIACTQQAPLFREVAEDAAFAGD
LVFANIRETAGWSREASSAGAKAAALVAMAAVPVAPPALVTLASKGVVLVYGRDEVAIEAGRQLDDELDVTVLLTRPEDV
APSRVWNFPVVQGTIRNARGHLGAFELTVDDFAVPAPSSRDRLRFGLSRDGAVSKADIILDLSGGVPLFPAHDLREGYLR
ADPADRAGVAIAIAKATGLVGEFEKPRYVDFHADLCAHSRSRITGCTRCLDLCPTGAITPAGNHVAIDAEICAGCGNCAA
VCPTGAAAYAIPDAETLLQRLRTVLVTYREAGGSEPIVLFHDAAHGEPLIDALARFGPGLPANVLPVAVNEITQLGVEAW
TAPVAWGAVAVRALCSAKPKHELTGVDRNVSIANLLGQSLGYGADVCGVIEADDPDILRSALDGVKPGATTRKPASFLPL
GTKRSLLRSTMVELHRAAPAPVDCVAMPAAAPFGGIEVDVEGCTLCLSCVSACPTGALSDSEDRPALYFSESACVQCGLC
AATCPEQVITLVPQVDFQAWNAPRRAVKEEEPYNCIACGKAFGTRSTIERIVAKLEGKHWMFAGENAKRLDLVRMCDNCR
VDAVMNEGFDPYQASPRPAPRTTEDYLQARDTPDKNKTV

Specific function: Probable Electron Transfer Protein For Hydrogenase 3 [C]

COG id: COG1145

COG function: function code C; Ferredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 71799; Mature: 71668

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLGRSRTVFVCSCERSMPSYGESVARGCKNVSIQSGDQFCGAELDRVRSALSAGEAVTI
CCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
ACTQQAPLFREVAEDAAFAGDLVFANIRETAGWSREASSAGAKAAALVAMAAVPVAPPAL
EECCCCHHHHHHHHHHHHHCCCEEEECHHHCCCCCCHHHCCHHHHHHHHHHHCCCCCHHH
VTLASKGVVLVYGRDEVAIEAGRQLDDELDVTVLLTRPEDVAPSRVWNFPVVQGTIRNAR
HEECCCCEEEEECCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHCC
GHLGAFELTVDDFAVPAPSSRDRLRFGLSRDGAVSKADIILDLSGGVPLFPAHDLREGYL
CCCEEEEEEECCCCCCCCCCCCHHEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCC
RADPADRAGVAIAIAKATGLVGEFEKPRYVDFHADLCAHSRSRITGCTRCLDLCPTGAIT
CCCCCCCCCEEEEEEEHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAGNHVAIDAEICAGCGNCAAVCPTGAAAYAIPDAETLLQRLRTVLVTYREAGGSEPIVL
CCCCEEEEEHHHHCCCCCCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEE
FHDAAHGEPLIDALARFGPGLPANVLPVAVNEITQLGVEAWTAPVAWGAVAVRALCSAKP
EECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KHELTGVDRNVSIANLLGQSLGYGADVCGVIEADDPDILRSALDGVKPGATTRKPASFLP
CHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCC
LGTKRSLLRSTMVELHRAAPAPVDCVAMPAAAPFGGIEVDVEGCTLCLSCVSACPTGALS
CCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC
DSEDRPALYFSESACVQCGLCAATCPEQVITLVPQVDFQAWNAPRRAVKEEEPYNCIACG
CCCCCCEEEECCCHHHHCCCHHHCCHHHHHHHHCCCCCHHCCCHHHHHCCCCCCCEEEEC
KAFGTRSTIERIVAKLEGKHWMFAGENAKRLDLVRMCDNCRVDAVMNEGFDPYQASPRPA
CCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCC
PRTTEDYLQARDTPDKNKTV
CCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TLGRSRTVFVCSCERSMPSYGESVARGCKNVSIQSGDQFCGAELDRVRSALSAGEAVTI
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
ACTQQAPLFREVAEDAAFAGDLVFANIRETAGWSREASSAGAKAAALVAMAAVPVAPPAL
EECCCCHHHHHHHHHHHHHCCCEEEECHHHCCCCCCHHHCCHHHHHHHHHHHCCCCCHHH
VTLASKGVVLVYGRDEVAIEAGRQLDDELDVTVLLTRPEDVAPSRVWNFPVVQGTIRNAR
HEECCCCEEEEECCCCEEECCCCCCCCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHCC
GHLGAFELTVDDFAVPAPSSRDRLRFGLSRDGAVSKADIILDLSGGVPLFPAHDLREGYL
CCCEEEEEEECCCCCCCCCCCCHHEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHCCCC
RADPADRAGVAIAIAKATGLVGEFEKPRYVDFHADLCAHSRSRITGCTRCLDLCPTGAIT
CCCCCCCCCEEEEEEEHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PAGNHVAIDAEICAGCGNCAAVCPTGAAAYAIPDAETLLQRLRTVLVTYREAGGSEPIVL
CCCCEEEEEHHHHCCCCCCCEECCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEE
FHDAAHGEPLIDALARFGPGLPANVLPVAVNEITQLGVEAWTAPVAWGAVAVRALCSAKP
EECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
KHELTGVDRNVSIANLLGQSLGYGADVCGVIEADDPDILRSALDGVKPGATTRKPASFLP
CHHHCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCC
LGTKRSLLRSTMVELHRAAPAPVDCVAMPAAAPFGGIEVDVEGCTLCLSCVSACPTGALS
CCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCC
DSEDRPALYFSESACVQCGLCAATCPEQVITLVPQVDFQAWNAPRRAVKEEEPYNCIACG
CCCCCCEEEECCCHHHHCCCHHHCCHHHHHHHHCCCCCHHCCCHHHHHCCCCCCCEEEEC
KAFGTRSTIERIVAKLEGKHWMFAGENAKRLDLVRMCDNCRVDAVMNEGFDPYQASPRPA
CCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEHHHHCCCCCCCCCCCCC
PRTTEDYLQARDTPDKNKTV
CCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; Proton; reduced ferredoxin [C]

Specific reaction: formate = CO2 + H2 Proton + reduced ferredoxin = H2 + oxidized ferredoxin [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA