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The map label for this gene is yubM [H]

Identifier: 110634690

GI number: 110634690

Start: 2494993

End: 2496603

Strand: Reverse

Name: yubM [H]

Synonym: Meso_2346

Alternate gene names: 110634690

Gene position: 2496603-2494993 (Counterclockwise)

Preceding gene: 110634691

Following gene: 110634689

Centisome position: 56.58

GC content: 66.73

Gene sequence:

>1611_bases
GTGTCGCCGGTGCTGCTCGACGTCTATGCCGAGGACGGCATGACGCTCGCGCAACTCGAGGCCTTCACCGTATCGGGCGA
TCATGAGCGTCAGGAGCAGGTGTTCGAACGCCTTAAGACCGCCTACGACAAGTCGGCCTATGCGATCCGGCGCATGCTCA
CCGAAGGCGCCGTTCGCGCTTCCGACAAGCGGGCCCAGTTCATCGGCATCGACGCTTATGTCGAGGCCGGCGGAACGGTG
CTGCGCGACCTCTTTGAGGGCGATGACGGCGGCTGGCTGCAGGACGTCGATCTGGTCAACCAGATGGTGGCCGACAAGCT
CAAGAGGGAATCCGAGGCCATCGTCGCCGAGGGCTGGAAGTGGACCGAGGTCGCGCCCGACTTTGCCTATGGTCACACCT
ATGGCCTCCGGCGGCTCCACGGTGAACCCGTGCCGCTCACGACCGAGGAGGAGGCGACGCGCGACGCCCTCAAGGCCGAG
TTCGACCGCCTGGTCGAGGAGCATGAGGAGGCCGATGAACTTCCCGACGAGGTCGATGAGCGGCTCGGTGAGCTCGAAAC
CGCTCTGGAGGCCTTCGAGGAACGGCCGCTGACATTCGATCCGGAGGAGATAACTCGCGCCGGGGCTTTTGTCAGCATTG
CCGGAGACGGTCGCCTGCGCGTCGACCGCGGCTATGTCCGGCCGGAGGATGAGGCGGCGGTAGAGGCGGAGGCCGATGCA
CCCGACGGTGAAGCGACCGGTGACGACACACCAGCCGACAGCGATGCCGACGAGGAAGGCGCCACCGGCGGGGCCGTGAC
CGAGCCCGAGGAGGACGAAGGACTCTCGCCCATCTCAGATCGGCTGATGACCGAACTGACCGCGCATCGGACACTCGGCT
TGCGGCATGCTCTGGGCGAGCATCCCGACGTCGCCTTCCGCGCGGCACTGCATGCCCTGACGCTCAAGGTCTTCTACCAC
TACGGCTCGGATAGCTGCCTCGAGCTGGACCTGAAGACCGTCAGCTTCGGCGCTCAGGCGCCGGGACTGAACGACAGCGT
CTCAGGCGAGGCGATCCGGGCGCGGCACGAAAGCTGGGCGAAGGCCCTGCCGAGGGACTCTGCCGACCTCTGGGACACGC
TGGGCGAGTGGGACAGCGACAGCCGTGCAGCTCTCTTCGCCCATGTCGTCAGCCTCTCGGTCAACGCGGTGTATGAGGCG
TGGAATCGGAAGCCACGGGCACTGGCCCACGCTGATCAACTGGCCCAGGCCGTGGACCTCGACATGTCGGCCTGCTGGAA
GCCGACCGTGGATACCTTCCTCGGTCGTGTGACCAAGGCGCGCATCCTGCAGGCGGTCGTCGAGGCGAAGGGCCAGCCGG
CCGCCGACCGCCTCGTCAATCTCAAGAAAGGCGACATGGCGACGGAAGCCGAGACGCTGTTGGCCGCTACCGGCTGGCTG
CCCGACCCACTCCGGACGCCGGGACAGACGACGCCCGTCGATATGGCCGCGTCGGCCTCTAGCGTCGCGGAAACGGCGGA
GAATGACGGCGAAACGGCCATGGCCGAAGACGACGGTATCGCCGACGATGACGAAGCCGGCACCGCGGCTCAGACCATCG
CCGCCGAATAG

Upstream 100 bases:

>100_bases
CTTCCTCACCCTGCGCGAGAAGGGTCAGTCCGAGGAGGAGATCGCCGCCACGTTCTTCGTGTCGGTCAATGTCGTCAAGT
AGCGCCTGAAGCTTGCTTCG

Downstream 100 bases:

>100_bases
GCTCCCCTTGACCGCAAGACTGGCCCGCTGGCGACGGCGGGCCATTTTCATGGAGGCCATCATGCGAGAAACACCGCATG
AGCTGGCGCGCCATCTCGGC

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MSPVLLDVYAEDGMTLAQLEAFTVSGDHERQEQVFERLKTAYDKSAYAIRRMLTEGAVRASDKRAQFIGIDAYVEAGGTV
LRDLFEGDDGGWLQDVDLVNQMVADKLKRESEAIVAEGWKWTEVAPDFAYGHTYGLRRLHGEPVPLTTEEEATRDALKAE
FDRLVEEHEEADELPDEVDERLGELETALEAFEERPLTFDPEEITRAGAFVSIAGDGRLRVDRGYVRPEDEAAVEAEADA
PDGEATGDDTPADSDADEEGATGGAVTEPEEDEGLSPISDRLMTELTAHRTLGLRHALGEHPDVAFRAALHALTLKVFYH
YGSDSCLELDLKTVSFGAQAPGLNDSVSGEAIRARHESWAKALPRDSADLWDTLGEWDSDSRAALFAHVVSLSVNAVYEA
WNRKPRALAHADQLAQAVDLDMSACWKPTVDTFLGRVTKARILQAVVEAKGQPAADRLVNLKKGDMATEAETLLAATGWL
PDPLRTPGQTTPVDMAASASSVAETAENDGETAMAEDDGIADDDEAGTAAQTIAAE

Sequences:

>Translated_536_residues
MSPVLLDVYAEDGMTLAQLEAFTVSGDHERQEQVFERLKTAYDKSAYAIRRMLTEGAVRASDKRAQFIGIDAYVEAGGTV
LRDLFEGDDGGWLQDVDLVNQMVADKLKRESEAIVAEGWKWTEVAPDFAYGHTYGLRRLHGEPVPLTTEEEATRDALKAE
FDRLVEEHEEADELPDEVDERLGELETALEAFEERPLTFDPEEITRAGAFVSIAGDGRLRVDRGYVRPEDEAAVEAEADA
PDGEATGDDTPADSDADEEGATGGAVTEPEEDEGLSPISDRLMTELTAHRTLGLRHALGEHPDVAFRAALHALTLKVFYH
YGSDSCLELDLKTVSFGAQAPGLNDSVSGEAIRARHESWAKALPRDSADLWDTLGEWDSDSRAALFAHVVSLSVNAVYEA
WNRKPRALAHADQLAQAVDLDMSACWKPTVDTFLGRVTKARILQAVVEAKGQPAADRLVNLKKGDMATEAETLLAATGWL
PDPLRTPGQTTPVDMAASASSVAETAENDGETAMAEDDGIADDDEAGTAAQTIAAE
>Mature_535_residues
SPVLLDVYAEDGMTLAQLEAFTVSGDHERQEQVFERLKTAYDKSAYAIRRMLTEGAVRASDKRAQFIGIDAYVEAGGTVL
RDLFEGDDGGWLQDVDLVNQMVADKLKRESEAIVAEGWKWTEVAPDFAYGHTYGLRRLHGEPVPLTTEEEATRDALKAEF
DRLVEEHEEADELPDEVDERLGELETALEAFEERPLTFDPEEITRAGAFVSIAGDGRLRVDRGYVRPEDEAAVEAEADAP
DGEATGDDTPADSDADEEGATGGAVTEPEEDEGLSPISDRLMTELTAHRTLGLRHALGEHPDVAFRAALHALTLKVFYHY
GSDSCLELDLKTVSFGAQAPGLNDSVSGEAIRARHESWAKALPRDSADLWDTLGEWDSDSRAALFAHVVSLSVNAVYEAW
NRKPRALAHADQLAQAVDLDMSACWKPTVDTFLGRVTKARILQAVVEAKGQPAADRLVNLKKGDMATEAETLLAATGWLP
DPLRTPGQTTPVDMAASASSVAETAENDGETAMAEDDGIADDDEAGTAAQTIAAE

Specific function: Unknown

COG id: COG1475

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the parB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004437
- InterPro:   IPR003115 [H]

Pfam domain/function: PF02195 ParBc [H]

EC number: NA

Molecular weight: Translated: 58111; Mature: 57980

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS00664 VINCULIN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPVLLDVYAEDGMTLAQLEAFTVSGDHERQEQVFERLKTAYDKSAYAIRRMLTEGAVRA
CCCEEEEEECCCCCEEEHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SDKRAQFIGIDAYVEAGGTVLRDLFEGDDGGWLQDVDLVNQMVADKLKRESEAIVAEGWK
CCCCCEEEEEHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCE
WTEVAPDFAYGHTYGLRRLHGEPVPLTTEEEATRDALKAEFDRLVEEHEEADELPDEVDE
ECCCCCCHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RLGELETALEAFEERPLTFDPEEITRAGAFVSIAGDGRLRVDRGYVRPEDEAAVEAEADA
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCEEEECCCCCCCCCCCCEECCCCC
PDGEATGDDTPADSDADEEGATGGAVTEPEEDEGLSPISDRLMTELTAHRTLGLRHALGE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
HPDVAFRAALHALTLKVFYHYGSDSCLELDLKTVSFGAQAPGLNDSVSGEAIRARHESWA
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHEECCCCCCCCCCCCCCHHHHHHHHHHH
KALPRDSADLWDTLGEWDSDSRAALFAHVVSLSVNAVYEAWNRKPRALAHADQLAQAVDL
HHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
DMSACWKPTVDTFLGRVTKARILQAVVEAKGQPAADRLVNLKKGDMATEAETLLAATGWL
CHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCC
PDPLRTPGQTTPVDMAASASSVAETAENDGETAMAEDDGIADDDEAGTAAQTIAAE
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
SPVLLDVYAEDGMTLAQLEAFTVSGDHERQEQVFERLKTAYDKSAYAIRRMLTEGAVRA
CCEEEEEECCCCCEEEHEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
SDKRAQFIGIDAYVEAGGTVLRDLFEGDDGGWLQDVDLVNQMVADKLKRESEAIVAEGWK
CCCCCEEEEEHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCE
WTEVAPDFAYGHTYGLRRLHGEPVPLTTEEEATRDALKAEFDRLVEEHEEADELPDEVDE
ECCCCCCHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
RLGELETALEAFEERPLTFDPEEITRAGAFVSIAGDGRLRVDRGYVRPEDEAAVEAEADA
HHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCEEEECCCCCCCCCCCCEECCCCC
PDGEATGDDTPADSDADEEGATGGAVTEPEEDEGLSPISDRLMTELTAHRTLGLRHALGE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
HPDVAFRAALHALTLKVFYHYGSDSCLELDLKTVSFGAQAPGLNDSVSGEAIRARHESWA
CCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHEECCCCCCCCCCCCCCHHHHHHHHHHH
KALPRDSADLWDTLGEWDSDSRAALFAHVVSLSVNAVYEAWNRKPRALAHADQLAQAVDL
HHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
DMSACWKPTVDTFLGRVTKARILQAVVEAKGQPAADRLVNLKKGDMATEAETLLAATGWL
CHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCC
PDPLRTPGQTTPVDMAASASSVAETAENDGETAMAEDDGIADDDEAGTAAQTIAAE
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9722640; 9628576 [H]