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The map label for this gene is traF [H]

Identifier: 110634678

GI number: 110634678

Start: 2486375

End: 2486920

Strand: Reverse

Name: traF [H]

Synonym: Meso_2333

Alternate gene names: 110634678

Gene position: 2486920-2486375 (Counterclockwise)

Preceding gene: 110634679

Following gene: 110634677

Centisome position: 56.36

GC content: 66.67

Gene sequence:

>546_bases
ATGACCCCCTTCGGCTACGTCATGGTGACGTATTTCGCGACGATGGGCGTTGCCGTCGCCCCGTTGATCCCGACGTCCGT
GAAACTGATTTGGAATGCTAGCGCGAGCGCGCCGATCGGGCTCTATACCGTTGAGGCGGCCGACCGGCTCGCGGTGCCCG
ATCTGGTCGCCGTTGATCCGCCCGAACCGCTGGCGCGCTTCATGGTGGAGCGCGGCTATCTGGCGCGCGGTGTGCCGCTT
CTGAAGCGCGTCCTCGGTTTGCCGGGACAGCGCGTTTGTCGCTCCGGTCGCACCATCACCGTCGATGCAGTCGAAATGGG
CGAGGCGCTGGAGCGCGATCGTTTCGGCCGCAAGCTGCCCGTCTGGCTGGGCTGCCGCGTGATCGCGGACGGCGAAATCT
TTCTCATGAACTGGGAGGTCCGGGACAGCCACGACGGTCGCTACTTCGGACCGATCCCCGCAAGCTCCGTCATCGGCCGG
GCGACACCGCTCTGGACCGACGAGGAGGGCGACGGTCGCTACCAATGGCGCGCGCCGACGCACTGA

Upstream 100 bases:

>100_bases
ATTGGCGGCATGTCCACAACCGTCTGATCGCCGGCCATGAGCCGCGCGCCTACACGCCCGAACAGCACGCCGCCTGGCTC
CAGCGACGGAGCATCGCGCC

Downstream 100 bases:

>100_bases
ACCCGACACTCACACTCGACCACAGGAGACGTCTCGATGGGACAGATCGGCGCATTTCGGCGGACCAAGTCCGGCTATTC
CGGCCGCATCCACACGCTCA

Product: TraF peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTPFGYVMVTYFATMGVAVAPLIPTSVKLIWNASASAPIGLYTVEAADRLAVPDLVAVDPPEPLARFMVERGYLARGVPL
LKRVLGLPGQRVCRSGRTITVDAVEMGEALERDRFGRKLPVWLGCRVIADGEIFLMNWEVRDSHDGRYFGPIPASSVIGR
ATPLWTDEEGDGRYQWRAPTH

Sequences:

>Translated_181_residues
MTPFGYVMVTYFATMGVAVAPLIPTSVKLIWNASASAPIGLYTVEAADRLAVPDLVAVDPPEPLARFMVERGYLARGVPL
LKRVLGLPGQRVCRSGRTITVDAVEMGEALERDRFGRKLPVWLGCRVIADGEIFLMNWEVRDSHDGRYFGPIPASSVIGR
ATPLWTDEEGDGRYQWRAPTH
>Mature_180_residues
TPFGYVMVTYFATMGVAVAPLIPTSVKLIWNASASAPIGLYTVEAADRLAVPDLVAVDPPEPLARFMVERGYLARGVPLL
KRVLGLPGQRVCRSGRTITVDAVEMGEALERDRFGRKLPVWLGCRVIADGEIFLMNWEVRDSHDGRYFGPIPASSVIGRA
TPLWTDEEGDGRYQWRAPTH

Specific function: Involved in conjugal transfer of the plasmid (Potential) [H]

COG id: COG4959

COG function: function code OU; Type IV secretory pathway, protease TraF

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S26C family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015927
- InterPro:   IPR011056
- InterPro:   IPR019533
- InterPro:   IPR014139 [H]

Pfam domain/function: PF10502 Peptidase_S26 [H]

EC number: NA

Molecular weight: Translated: 19971; Mature: 19840

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPFGYVMVTYFATMGVAVAPLIPTSVKLIWNASASAPIGLYTVEAADRLAVPDLVAVDP
CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECC
PEPLARFMVERGYLARGVPLLKRVLGLPGQRVCRSGRTITVDAVEMGEALERDRFGRKLP
CHHHHHHHHHCCCHHCCHHHHHHHHCCCHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCC
VWLGCRVIADGEIFLMNWEVRDSHDGRYFGPIPASSVIGRATPLWTDEEGDGRYQWRAPT
CEECEEEEECCEEEEEEEEEECCCCCEEECCCCCHHHHCCCCCCCCCCCCCCEEEEECCC
H
C
>Mature Secondary Structure 
TPFGYVMVTYFATMGVAVAPLIPTSVKLIWNASASAPIGLYTVEAADRLAVPDLVAVDP
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEEEECC
PEPLARFMVERGYLARGVPLLKRVLGLPGQRVCRSGRTITVDAVEMGEALERDRFGRKLP
CHHHHHHHHHCCCHHCCHHHHHHHHCCCHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCC
VWLGCRVIADGEIFLMNWEVRDSHDGRYFGPIPASSVIGRATPLWTDEEGDGRYQWRAPT
CEECEEEEECCEEEEEEEEEECCCCCEEECCCCCHHHHCCCCCCCCCCCCCCEEEEECCC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]