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The map label for this gene is trbB [H]

Identifier: 110634669

GI number: 110634669

Start: 2477470

End: 2478453

Strand: Reverse

Name: trbB [H]

Synonym: Meso_2324

Alternate gene names: 110634669

Gene position: 2478453-2477470 (Counterclockwise)

Preceding gene: 110634671

Following gene: 110634668

Centisome position: 56.17

GC content: 67.58

Gene sequence:

>984_bases
ATGGCGGCCACTCACCAGCAATCGGAAGCGATCCGGCGCGGCGCGCGCATGCTGCGCACGGCGCTTGGACCTGCCATCGC
CCGATTTCTGGAAGATCCCACAATCGTCGAAGTGATGCTCAACCCCGACGGCCGCCTGTGGGTCGATCGTCTGGTGCAAG
GGCTTGCCGACACCGGCGAGCGGCTGCCCGCCGCTGACGGCGAGCGCATCGTGCGCCTGGTCGCACATCACGTCGGCGTA
GAGGTGCATCCCCGAAGCCCCCGTGTGTCGGCGGAGCTTCCCGAGACGGGGGAGCGGTTCGAGGGCTTGTTGCCGCCAGT
CGTGATGGCTCCGGCCTTCGCGATCCGGAAACCTGCCGTCGCGGTCTTCACCCTCAACGATTATATCGCCGCCGGCATCA
TGTCGGCGGATCAGGCCGCAGTTCTCCGTCGGGCCGTTATCGGGCGCGAGAACATACTTGTCGCAGGCGGCACCTCGACC
GGCAAGACGACGCTGACCAACGCGTTGCTGGCCGAGGTAGCGAAGGGTGCTGATCGCGTCGTCATCATCGAGGATACGCG
CGAACTGCAATGCGCCGCGCCCAACCTCGTCGCCATGCGTACGAAGGACGGCGTCGCCACGCTCTCCGATCTGGTCCGTT
CCTCGCTTCGTCTCAGGCCCGACCGCATCCCGATCGGCGAGGTGCGAGGGAGCGAAGCGCTCGACCTTCTCAAGGCATGG
GGCACTGGCCATCCCGGCGGCATCGGCACCATCCATGCCGGCACCGGCATCGGCGCGCTGCGCCGGCTCGAGCAGCTCAT
CCAGGAAGCCGTCGTCACCGTTCCGCGCGCTCTGATCGCCGAGACGATCGATCTCGTTGCCGTGCTCTCCGGCCGTGGCG
GCTCGCGCCGGCTTGCCGAGCTGGCCCGCGTCGAAGGGCTCGGACCGGACGGCGACTACCGCATCACCCCAGCAGACCCG
AACCGTACAGGAGACCCATCATGA

Upstream 100 bases:

>100_bases
ACGCACCTAGATACTTGTTGAATCGGCACAAGATCCGGTTCTTTTAATCATCCCCGTCCGGGGATCGCCTGTCGCATCCC
CGCAAGCAACGTGGGACGAT

Downstream 100 bases:

>100_bases
TCCGTTTCGTCTCGCGCGGCTGCCGGCATATGGCGACGGCCGTCGCCGCTGTGTCCGTCAGCCTGATGCTGGCGCCCTCT
GCCCATGCTTCGGGTTCGTC

Product: type II secretion system protein E

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MAATHQQSEAIRRGARMLRTALGPAIARFLEDPTIVEVMLNPDGRLWVDRLVQGLADTGERLPAADGERIVRLVAHHVGV
EVHPRSPRVSAELPETGERFEGLLPPVVMAPAFAIRKPAVAVFTLNDYIAAGIMSADQAAVLRRAVIGRENILVAGGTST
GKTTLTNALLAEVAKGADRVVIIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGSEALDLLKAW
GTGHPGGIGTIHAGTGIGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGGSRRLAELARVEGLGPDGDYRITPADP
NRTGDPS

Sequences:

>Translated_327_residues
MAATHQQSEAIRRGARMLRTALGPAIARFLEDPTIVEVMLNPDGRLWVDRLVQGLADTGERLPAADGERIVRLVAHHVGV
EVHPRSPRVSAELPETGERFEGLLPPVVMAPAFAIRKPAVAVFTLNDYIAAGIMSADQAAVLRRAVIGRENILVAGGTST
GKTTLTNALLAEVAKGADRVVIIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGSEALDLLKAW
GTGHPGGIGTIHAGTGIGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGGSRRLAELARVEGLGPDGDYRITPADP
NRTGDPS
>Mature_326_residues
AATHQQSEAIRRGARMLRTALGPAIARFLEDPTIVEVMLNPDGRLWVDRLVQGLADTGERLPAADGERIVRLVAHHVGVE
VHPRSPRVSAELPETGERFEGLLPPVVMAPAFAIRKPAVAVFTLNDYIAAGIMSADQAAVLRRAVIGRENILVAGGTSTG
KTTLTNALLAEVAKGADRVVIIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGSEALDLLKAWG
TGHPGGIGTIHAGTGIGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGGSRRLAELARVEGLGPDGDYRITPADPN
RTGDPS

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014149
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 34695; Mature: 34564

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATHQQSEAIRRGARMLRTALGPAIARFLEDPTIVEVMLNPDGRLWVDRLVQGLADTGE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
RLPAADGERIVRLVAHHVGVEVHPRSPRVSAELPETGERFEGLLPPVVMAPAFAIRKPAV
CCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCHHHHHCCCCHHHHHCHHHHCCCCE
AVFTLNDYIAAGIMSADQAAVLRRAVIGRENILVAGGTSTGKTTLTNALLAEVAKGADRV
EEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEE
VIIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGSEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGTGIGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGGSRRLAE
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LARVEGLGPDGDYRITPADPNRTGDPS
HHHHCCCCCCCCEEEECCCCCCCCCCC
>Mature Secondary Structure 
AATHQQSEAIRRGARMLRTALGPAIARFLEDPTIVEVMLNPDGRLWVDRLVQGLADTGE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
RLPAADGERIVRLVAHHVGVEVHPRSPRVSAELPETGERFEGLLPPVVMAPAFAIRKPAV
CCCCCCHHHHHHHHHHHHCEEECCCCCCCCCCCCCCHHHHHCCCCHHHHHCHHHHCCCCE
AVFTLNDYIAAGIMSADQAAVLRRAVIGRENILVAGGTSTGKTTLTNALLAEVAKGADRV
EEEEEHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEE
VIIEDTRELQCAAPNLVAMRTKDGVATLSDLVRSSLRLRPDRIPIGEVRGSEALDLLKAW
EEEECCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
GTGHPGGIGTIHAGTGIGALRRLEQLIQEAVVTVPRALIAETIDLVAVLSGRGGSRRLAE
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LARVEGLGPDGDYRITPADPNRTGDPS
HHHHCCCCCCCCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]