Click here to switch to the map view.

The map label for this gene is trbI [H]

Identifier: 110634660

GI number: 110634660

Start: 2469178

End: 2470368

Strand: Reverse

Name: trbI [H]

Synonym: Meso_2315

Alternate gene names: 110634660

Gene position: 2470368-2469178 (Counterclockwise)

Preceding gene: 110634661

Following gene: 110634659

Centisome position: 55.99

GC content: 66.67

Gene sequence:

>1191_bases
ATGAGCGAGAACGAGAGCAGGCAACAGCACGAAGATGTGCCGCTGACGGGTTCGACCTCCAACGCTGCAGCCATGCGGCT
GCGCGCGGAGCCGCCGCGCGTGACCCGCCTGTCACGCAAGGTGCTCGCCTGCATCGGTGTTGTCGCTTCGCTGGGCATCG
GCGGCGCGCTGATCTATGCGCTCCAGTCCCGCCATGCCAACACAAGCAACGAGGAGCTGTATTCCACCGAGAACCGGCCG
ACAGCCGATGGCCTCGCCAGCCTCCCTCGCGACTACACAGGTCCGGTGCTCGGCCCCCCACTGCCCGGCGATCTTGGTCG
ACCGATCGTCGATGCGCAGACCCGCGGGCAACCGGTGGTACCACCCGCCATGGCGACGCCGACCGTCGATCCGGAAGAAC
AGAAGCGTCTGGCCGAAGAGGAGGCCGCGCGCACCAGCCGCGTCTTCTTTCAGACCGAGGCGCGGACGGCGGTCGCCGGA
CCGCCCGGCGTCGCCACGACGCCGAACCTTGTCGGTTCCGGACTGCCTTCCCAGCCGGACACGCCGACGGCGCAGGATCG
CCAGCTCGCTTTCATCAATGCCGCCGTCGACCGGCGCACCGTCGCGCCCGATCGCGTCATGCCGCCGGTCTCGCCATACG
TGCTCCAGGCCGGCTCTGTCATCCCGGCGGCGCTTATCACGGCTATCCGTTCCGATCTGCCCGGCCAGATCGCAGCGCAG
GTCACGGAGAACGTCTACGACAGCCCAACCGGCAGGTTGCTCCTTATCCCGCAAGGCACGCGCGTCATCGGCGAATACAG
CAACGATGTCAAATTTGGTCAGCGCCGCGTGCTGCTTGTCTGGAGCCGGCTGATATTTCCCAACGGTCGCTCCATCGTGC
TGGAGCGCCAGCCGGGCGCCGATGCCCAAGGCTACGCCGGACTCGAGGACGGTGTCGATTATCATTGGTGGGGTCTCGCC
AAGGCCGCCGGCCTTTCGACGCTGCTCGCGGTCGGCGCCGAACTGGCGATCGATAATGAAGATCGTCTGCTCAGTGCCAT
CCGCAACGGCGCCCAGGACACCATCAACGATGCCGGCCAGCAGATCATCCAGAGGCAGTTGCAGGTGGCGCCCACGCTGA
CGATCCGGCCGGGCTTTCCCGTCCGCATCGTCGTCACGCGAGATCTCGTACTCGAACCCTACGGACGCTGA

Upstream 100 bases:

>100_bases
TGATCGTCGACCACCTGTTCGGTGCGGCCGAGCTGCGCCTAGGCAGCGGCAAGCGCCAGCAGACCGTCAGGATCGTACGC
ACGGATGGGAGACCATCGAC

Downstream 100 bases:

>100_bases
TTGATGACCAAGCTGAGGCTCGGCGCGATCATGGACGACAAGCCGGTCAAGCTCACGATCGAGATACCGGCCGCCGTGCA
TCGCGATCTTGTCGCCTATG

Product: conjugation TrbI-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSENESRQQHEDVPLTGSTSNAAAMRLRAEPPRVTRLSRKVLACIGVVASLGIGGALIYALQSRHANTSNEELYSTENRP
TADGLASLPRDYTGPVLGPPLPGDLGRPIVDAQTRGQPVVPPAMATPTVDPEEQKRLAEEEAARTSRVFFQTEARTAVAG
PPGVATTPNLVGSGLPSQPDTPTAQDRQLAFINAAVDRRTVAPDRVMPPVSPYVLQAGSVIPAALITAIRSDLPGQIAAQ
VTENVYDSPTGRLLLIPQGTRVIGEYSNDVKFGQRRVLLVWSRLIFPNGRSIVLERQPGADAQGYAGLEDGVDYHWWGLA
KAAGLSTLLAVGAELAIDNEDRLLSAIRNGAQDTINDAGQQIIQRQLQVAPTLTIRPGFPVRIVVTRDLVLEPYGR

Sequences:

>Translated_396_residues
MSENESRQQHEDVPLTGSTSNAAAMRLRAEPPRVTRLSRKVLACIGVVASLGIGGALIYALQSRHANTSNEELYSTENRP
TADGLASLPRDYTGPVLGPPLPGDLGRPIVDAQTRGQPVVPPAMATPTVDPEEQKRLAEEEAARTSRVFFQTEARTAVAG
PPGVATTPNLVGSGLPSQPDTPTAQDRQLAFINAAVDRRTVAPDRVMPPVSPYVLQAGSVIPAALITAIRSDLPGQIAAQ
VTENVYDSPTGRLLLIPQGTRVIGEYSNDVKFGQRRVLLVWSRLIFPNGRSIVLERQPGADAQGYAGLEDGVDYHWWGLA
KAAGLSTLLAVGAELAIDNEDRLLSAIRNGAQDTINDAGQQIIQRQLQVAPTLTIRPGFPVRIVVTRDLVLEPYGR
>Mature_395_residues
SENESRQQHEDVPLTGSTSNAAAMRLRAEPPRVTRLSRKVLACIGVVASLGIGGALIYALQSRHANTSNEELYSTENRPT
ADGLASLPRDYTGPVLGPPLPGDLGRPIVDAQTRGQPVVPPAMATPTVDPEEQKRLAEEEAARTSRVFFQTEARTAVAGP
PGVATTPNLVGSGLPSQPDTPTAQDRQLAFINAAVDRRTVAPDRVMPPVSPYVLQAGSVIPAALITAIRSDLPGQIAAQV
TENVYDSPTGRLLLIPQGTRVIGEYSNDVKFGQRRVLLVWSRLIFPNGRSIVLERQPGADAQGYAGLEDGVDYHWWGLAK
AAGLSTLLAVGAELAIDNEDRLLSAIRNGAQDTINDAGQQIIQRQLQVAPTLTIRPGFPVRIVVTRDLVLEPYGR

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 42394; Mature: 42262

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSENESRQQHEDVPLTGSTSNAAAMRLRAEPPRVTRLSRKVLACIGVVASLGIGGALIYA
CCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LQSRHANTSNEELYSTENRPTADGLASLPRDYTGPVLGPPLPGDLGRPIVDAQTRGQPVV
HHHHCCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
PPAMATPTVDPEEQKRLAEEEAARTSRVFFQTEARTAVAGPPGVATTPNLVGSGLPSQPD
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCHHHCCCCCCCCC
TPTAQDRQLAFINAAVDRRTVAPDRVMPPVSPYVLQAGSVIPAALITAIRSDLPGQIAAQ
CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
VTENVYDSPTGRLLLIPQGTRVIGEYSNDVKFGQRRVLLVWSRLIFPNGRSIVLERQPGA
HHHHHHCCCCCCEEEEECCCEEECCCCCCHHHCCHHHEEEHHHHHCCCCCEEEEECCCCC
DAQGYAGLEDGVDYHWWGLAKAAGLSTLLAVGAELAIDNEDRLLSAIRNGAQDTINDAGQ
CCCCCCCHHCCCCEEHHHHHHHHHHHHHHHHCHHEEECCHHHHHHHHHCCCHHHHHHHHH
QIIQRQLQVAPTLTIRPGFPVRIVVTRDLVLEPYGR
HHHHHHHHHCCEEEECCCCCEEEEEEECEEECCCCC
>Mature Secondary Structure 
SENESRQQHEDVPLTGSTSNAAAMRLRAEPPRVTRLSRKVLACIGVVASLGIGGALIYA
CCCCCHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LQSRHANTSNEELYSTENRPTADGLASLPRDYTGPVLGPPLPGDLGRPIVDAQTRGQPVV
HHHHCCCCCCCHHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
PPAMATPTVDPEEQKRLAEEEAARTSRVFFQTEARTAVAGPPGVATTPNLVGSGLPSQPD
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCHHHCCCCCCCCC
TPTAQDRQLAFINAAVDRRTVAPDRVMPPVSPYVLQAGSVIPAALITAIRSDLPGQIAAQ
CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
VTENVYDSPTGRLLLIPQGTRVIGEYSNDVKFGQRRVLLVWSRLIFPNGRSIVLERQPGA
HHHHHHCCCCCCEEEEECCCEEECCCCCCHHHCCHHHEEEHHHHHCCCCCEEEEECCCCC
DAQGYAGLEDGVDYHWWGLAKAAGLSTLLAVGAELAIDNEDRLLSAIRNGAQDTINDAGQ
CCCCCCCHHCCCCEEHHHHHHHHHHHHHHHHCHHEEECCHHHHHHHHHCCCHHHHHHHHH
QIIQRQLQVAPTLTIRPGFPVRIVVTRDLVLEPYGR
HHHHHHHHHCCEEEECCCCCEEEEEEECEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]