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The map label for this gene is lpsA [H]

Identifier: 110634463

GI number: 110634463

Start: 2270988

End: 2271764

Strand: Reverse

Name: lpsA [H]

Synonym: Meso_2114

Alternate gene names: 110634463

Gene position: 2271764-2270988 (Counterclockwise)

Preceding gene: 110634464

Following gene: 110634461

Centisome position: 51.49

GC content: 57.92

Gene sequence:

>777_bases
ATGAAGATCTTCCTCATCAATCTAGACCGGCGGCCCGACCGCCTGCGGCACATGACCGAGATCCTCGACGGGCTCGGCCT
GCCGTTCACGCGCCTATCTGCGGTAGACGGTATGCAGCTCCCGATGGAGGAGGTGCAGCGGTTGGGGAGCTTGCTCCCAG
GCGCTACGGCTTGTTTTCTCAGCCATAGGGAGTGCTGGAAGCGTGTTGTCGATGAGGCGCTTCCGCATGCAGTCGTCCTG
GAAGACGATTTGCACCTGGCGCCGGATGCGGCCTCTTTGCTTAGCCATGGGGAGTGGGTTCCAACGGAGGCTGATGTTGT
CAAGCTGGAGACGAGGCTTTGCCGCACTCGTGTTGACAAAGGTGTAGCAGCCGCCATCGGTAGCAGAAGCCTTCACCGGC
TGAGAAGCAGTCATATGGGTACGGGGGGGTATATCGTCACTAGGAAAGGGGCGGAAAGACTGCTTGCACTGAGTGAACGC
CTGGAGGCTCCGGTCGATCATTTCATGTTCAATGCAGGATTGCACTCGGCAGCTTCGCTGACGACTTTCCAAATGGTCCC
GGCCGTTTGTGTCCAGGATTCCTATATTGGGCGGCAGTCGATGGTGCTTGGCATCGAAAGCGACCTGCTTGACGAACGGC
CACCCACCAAACCGCGGGGGATCCGCAAGCTCTGGCGGGAGCTAAAGAGGCCGTTTTTTCAGTTTTCAGGGTTTGCCCAA
AGACTGGCATCTGGCCTTTTGACGGATAAGAAGTGGGTGTTCGTGAAGTTTGCCTGA

Upstream 100 bases:

>100_bases
GTGGCGCGCGGAGGCGGACAAGGTCGATCCGAACTGGAAGCCGATTTGATATGTTGATGCTATCGGTCGGGTGAATAAGG
GCCAGTGTGCTGCATTCCAG

Downstream 100 bases:

>100_bases
TCTGCCGCATTCCTGATGCTGGAATACCGGCGCCATCTCGGTTCACCCGATCGCCACCAGTCCTTCGTCCTTCACTTGCC
GGATGGTGAGCGCGGTGCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MKIFLINLDRRPDRLRHMTEILDGLGLPFTRLSAVDGMQLPMEEVQRLGSLLPGATACFLSHRECWKRVVDEALPHAVVL
EDDLHLAPDAASLLSHGEWVPTEADVVKLETRLCRTRVDKGVAAAIGSRSLHRLRSSHMGTGGYIVTRKGAERLLALSER
LEAPVDHFMFNAGLHSAASLTTFQMVPAVCVQDSYIGRQSMVLGIESDLLDERPPTKPRGIRKLWRELKRPFFQFSGFAQ
RLASGLLTDKKWVFVKFA

Sequences:

>Translated_258_residues
MKIFLINLDRRPDRLRHMTEILDGLGLPFTRLSAVDGMQLPMEEVQRLGSLLPGATACFLSHRECWKRVVDEALPHAVVL
EDDLHLAPDAASLLSHGEWVPTEADVVKLETRLCRTRVDKGVAAAIGSRSLHRLRSSHMGTGGYIVTRKGAERLLALSER
LEAPVDHFMFNAGLHSAASLTTFQMVPAVCVQDSYIGRQSMVLGIESDLLDERPPTKPRGIRKLWRELKRPFFQFSGFAQ
RLASGLLTDKKWVFVKFA
>Mature_258_residues
MKIFLINLDRRPDRLRHMTEILDGLGLPFTRLSAVDGMQLPMEEVQRLGSLLPGATACFLSHRECWKRVVDEALPHAVVL
EDDLHLAPDAASLLSHGEWVPTEADVVKLETRLCRTRVDKGVAAAIGSRSLHRLRSSHMGTGGYIVTRKGAERLLALSER
LEAPVDHFMFNAGLHSAASLTTFQMVPAVCVQDSYIGRQSMVLGIESDLLDERPPTKPRGIRKLWRELKRPFFQFSGFAQ
RLASGLLTDKKWVFVKFA

Specific function: Involved in the biosynthesis of a moiety on the core of the lipopolysaccharide molecule [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasm. Note=Assembles at the inner surface of the cytoplasmic membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71983853, Length=244, Percent_Identity=28.6885245901639, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24581946, Length=188, Percent_Identity=29.2553191489362, Blast_Score=71, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 28908; Mature: 28908

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIFLINLDRRPDRLRHMTEILDGLGLPFTRLSAVDGMQLPMEEVQRLGSLLPGATACFL
CEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
SHRECWKRVVDEALPHAVVLEDDLHLAPDAASLLSHGEWVPTEADVVKLETRLCRTRVDK
HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GVAAAIGSRSLHRLRSSHMGTGGYIVTRKGAERLLALSERLEAPVDHFMFNAGLHSAASL
HHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
TTFQMVPAVCVQDSYIGRQSMVLGIESDLLDERPPTKPRGIRKLWRELKRPFFQFSGFAQ
HHHHHHHHHHHHHHHCCCHHEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLASGLLTDKKWVFVKFA
HHHHHHCCCCCEEEEEEC
>Mature Secondary Structure
MKIFLINLDRRPDRLRHMTEILDGLGLPFTRLSAVDGMQLPMEEVQRLGSLLPGATACFL
CEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
SHRECWKRVVDEALPHAVVLEDDLHLAPDAASLLSHGEWVPTEADVVKLETRLCRTRVDK
HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GVAAAIGSRSLHRLRSSHMGTGGYIVTRKGAERLLALSERLEAPVDHFMFNAGLHSAASL
HHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHH
TTFQMVPAVCVQDSYIGRQSMVLGIESDLLDERPPTKPRGIRKLWRELKRPFFQFSGFAQ
HHHHHHHHHHHHHHHCCCHHEEEECCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLASGLLTDKKWVFVKFA
HHHHHHCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7781993; 1885539 [H]