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The map label for this gene is pcaH [H]

Identifier: 110634400

GI number: 110634400

Start: 2201712

End: 2202452

Strand: Direct

Name: pcaH [H]

Synonym: Meso_2050

Alternate gene names: 110634400

Gene position: 2201712-2202452 (Clockwise)

Preceding gene: 110634399

Following gene: 110634401

Centisome position: 49.9

GC content: 62.21

Gene sequence:

>741_bases
ATGAAGAACGAAAGACCCGAAACGGGCGGCTTCTTCCAGCGCGACCGTACCTGGCAGCCGCCAGCCTTCTCGCCAGGGTA
TAAGAGCACGGTGGTGCGCTCGCCGCAGCGCGCGCCGGTTTCCTTCGGCAACACGCTTACCGAGATCACCGGGCCGGTTT
TCGGCCGCAGCCTTCTGGGACCGCTCGACAATGATCTGACGGTCAACTACGCCAAGCCCGGCGAGAGCGCCATCGGGCCG
CGCATCGTCGTTTATGGCCGTGTGCTGGACGAGAACGCCAGGCCCGTGCCGAATGTCCTGGTCGAGTTCTGGCAGGCCAA
TGCGGGCGGGCGCTACCGCCACAAGAAGGACGGCTATCTCGCCCCGCTTGATCCGAATTTCGGCGGCTGCGGACGCACCA
TTACGGACGAGGACGGCAATTATTGGTTCCGCACCATTCAGCCCGGAGCCTATCCGTGGCCGAACGGCATCAACGATTGG
CGGCCGGCACACATCCACTTTGCGATCTTCGGCCACGGCTTCGTGCAGCGGCTGATCACGCAGATGTATTTCGAAGGCGA
TCCAATGATCTGGCAATGTCCGATCGTGCGTACAATACCGGACAGGAAGGCGATTGAAGGTCTCGTTGCCGCGCTCGACA
TGGCATCGACGGTACCGATGGATGCGCGGGCCTACAAATTTGACATCGTGCTGCGCGGGCGCCGCTCGACGCTGTTCGAG
AACAAGCTGGAGGGCAACTGA

Upstream 100 bases:

>100_bases
CCATGATGCATGTCGCCATATATGCGGGGGTGCCCTCGGCTAACCACGCGATCAAGATCATCAAGCAAACGCTTGCCGAA
ATGCAATCGGGAGAAAAGGA

Downstream 100 bases:

>100_bases
TCATGGTGCAGTCACTGCCAAGGCTGAAGGAGACCGCCTCGCAGACGGCCGGTCCTTACGTCCATATCGGGCTTACGCCG
AACTATTGCGATATAAGCGG

Product: protocatechuate 3,4-dioxygenase, beta subunit

Products: NA

Alternate protein names: 3,4-PCD [H]

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKNERPETGGFFQRDRTWQPPAFSPGYKSTVVRSPQRAPVSFGNTLTEITGPVFGRSLLGPLDNDLTVNYAKPGESAIGP
RIVVYGRVLDENARPVPNVLVEFWQANAGGRYRHKKDGYLAPLDPNFGGCGRTITDEDGNYWFRTIQPGAYPWPNGINDW
RPAHIHFAIFGHGFVQRLITQMYFEGDPMIWQCPIVRTIPDRKAIEGLVAALDMASTVPMDARAYKFDIVLRGRRSTLFE
NKLEGN

Sequences:

>Translated_246_residues
MKNERPETGGFFQRDRTWQPPAFSPGYKSTVVRSPQRAPVSFGNTLTEITGPVFGRSLLGPLDNDLTVNYAKPGESAIGP
RIVVYGRVLDENARPVPNVLVEFWQANAGGRYRHKKDGYLAPLDPNFGGCGRTITDEDGNYWFRTIQPGAYPWPNGINDW
RPAHIHFAIFGHGFVQRLITQMYFEGDPMIWQCPIVRTIPDRKAIEGLVAALDMASTVPMDARAYKFDIVLRGRRSTLFE
NKLEGN
>Mature_246_residues
MKNERPETGGFFQRDRTWQPPAFSPGYKSTVVRSPQRAPVSFGNTLTEITGPVFGRSLLGPLDNDLTVNYAKPGESAIGP
RIVVYGRVLDENARPVPNVLVEFWQANAGGRYRHKKDGYLAPLDPNFGGCGRTITDEDGNYWFRTIQPGAYPWPNGINDW
RPAHIHFAIFGHGFVQRLITQMYFEGDPMIWQCPIVRTIPDRKAIEGLVAALDMASTVPMDARAYKFDIVLRGRRSTLFE
NKLEGN

Specific function: Plays an essential role in the utilization of numerous aromatic and hydroaromatic compounds via the beta-ketoadipate pathway [H]

COG id: COG3485

COG function: function code Q; Protocatechuate 3,4-dioxygenase beta subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intradiol ring-cleavage dioxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000627
- InterPro:   IPR015889
- InterPro:   IPR012785 [H]

Pfam domain/function: PF00775 Dioxygenase_C [H]

EC number: =1.13.11.3 [H]

Molecular weight: Translated: 27672; Mature: 27672

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNERPETGGFFQRDRTWQPPAFSPGYKSTVVRSPQRAPVSFGNTLTEITGPVFGRSLLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PLDNDLTVNYAKPGESAIGPRIVVYGRVLDENARPVPNVLVEFWQANAGGRYRHKKDGYL
CCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE
APLDPNFGGCGRTITDEDGNYWFRTIQPGAYPWPNGINDWRPAHIHFAIFGHGFVQRLIT
ECCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHH
QMYFEGDPMIWQCPIVRTIPDRKAIEGLVAALDMASTVPMDARAYKFDIVLRGRRSTLFE
HHHCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHH
NKLEGN
HCCCCC
>Mature Secondary Structure
MKNERPETGGFFQRDRTWQPPAFSPGYKSTVVRSPQRAPVSFGNTLTEITGPVFGRSLLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PLDNDLTVNYAKPGESAIGPRIVVYGRVLDENARPVPNVLVEFWQANAGGRYRHKKDGYL
CCCCCCEEEECCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE
APLDPNFGGCGRTITDEDGNYWFRTIQPGAYPWPNGINDWRPAHIHFAIFGHGFVQRLIT
ECCCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHH
QMYFEGDPMIWQCPIVRTIPDRKAIEGLVAALDMASTVPMDARAYKFDIVLRGRRSTLFE
HHHCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHHHH
NKLEGN
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8407791; 115853; 3194022; 7990141; 9254599; 9254600; 9298971 [H]