Click here to switch to the map view.

The map label for this gene is pcaC [H]

Identifier: 110634399

GI number: 110634399

Start: 2201314

End: 2201715

Strand: Direct

Name: pcaC [H]

Synonym: Meso_2049

Alternate gene names: 110634399

Gene position: 2201314-2201715 (Clockwise)

Preceding gene: 110634397

Following gene: 110634400

Centisome position: 49.89

GC content: 60.95

Gene sequence:

>402_bases
ATGAGCACGGAAGAAAAATCGAAGCGTCATGCCGAAGGCATGGCCACGCGCCGGTCGGTTCTGGGTGATGCCTGGGTGGA
CCGCGCCGAAGCCAACAAGACCGAATTCGACGCGCCATTCCAGGAGTTGATCACCGAAGCCGCCTGGGGTCATGTCTGGT
CACGGCCGACCTGGACCAAGCGCGAGCGCTCGATGGTGACGATCGCCCTGCTGGCTGCCCTTGGTCACTACGACGAGCTG
GCCATGCATGTGCGCGCAACGGCGAACACTGGCGCTACGGTCGACGACCTGCGCGAGGCCATGATGCATGTCGCCATATA
TGCGGGGGTGCCCTCGGCTAACCACGCGATCAAGATCATCAAGCAAACGCTTGCCGAAATGCAATCGGGAGAAAAGGAAT
GA

Upstream 100 bases:

>100_bases
TGCTGCAGGTGTTGCCTGGTTCCAATGTCCGCCGCACAACATGCAAGCTGAAGCCGGGAGCGGTGGCTTGCCGGCGTCTC
CATCCCCTGGGAGGAAGAAG

Downstream 100 bases:

>100_bases
AGAACGAAAGACCCGAAACGGGCGGCTTCTTCCAGCGCGACCGTACCTGGCAGCCGCCAGCCTTCTCGCCAGGGTATAAG
AGCACGGTGGTGCGCTCGCC

Product: 4-carboxymuconolactone decarboxylase

Products: NA

Alternate protein names: CMD [H]

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSTEEKSKRHAEGMATRRSVLGDAWVDRAEANKTEFDAPFQELITEAAWGHVWSRPTWTKRERSMVTIALLAALGHYDEL
AMHVRATANTGATVDDLREAMMHVAIYAGVPSANHAIKIIKQTLAEMQSGEKE

Sequences:

>Translated_133_residues
MSTEEKSKRHAEGMATRRSVLGDAWVDRAEANKTEFDAPFQELITEAAWGHVWSRPTWTKRERSMVTIALLAALGHYDEL
AMHVRATANTGATVDDLREAMMHVAIYAGVPSANHAIKIIKQTLAEMQSGEKE
>Mature_132_residues
STEEKSKRHAEGMATRRSVLGDAWVDRAEANKTEFDAPFQELITEAAWGHVWSRPTWTKRERSMVTIALLAALGHYDELA
MHVRATANTGATVDDLREAMMHVAIYAGVPSANHAIKIIKQTLAEMQSGEKE

Specific function: Unknown

COG id: COG0599

COG function: function code S; Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003779
- InterPro:   IPR012788 [H]

Pfam domain/function: PF02627 CMD [H]

EC number: =4.1.1.44 [H]

Molecular weight: Translated: 14806; Mature: 14675

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEEKSKRHAEGMATRRSVLGDAWVDRAEANKTEFDAPFQELITEAAWGHVWSRPTWTK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
RERSMVTIALLAALGHYDELAMHVRATANTGATVDDLREAMMHVAIYAGVPSANHAIKII
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
KQTLAEMQSGEKE
HHHHHHHHCCCCC
>Mature Secondary Structure 
STEEKSKRHAEGMATRRSVLGDAWVDRAEANKTEFDAPFQELITEAAWGHVWSRPTWTK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCH
RERSMVTIALLAALGHYDELAMHVRATANTGATVDDLREAMMHVAIYAGVPSANHAIKII
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHH
KQTLAEMQSGEKE
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2298704 [H]