| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is yddP [C]
Identifier: 110634208
GI number: 110634208
Start: 1996939
End: 1997904
Strand: Direct
Name: yddP [C]
Synonym: Meso_1858
Alternate gene names: 110634208
Gene position: 1996939-1997904 (Clockwise)
Preceding gene: 110634207
Following gene: 110634209
Centisome position: 45.26
GC content: 65.32
Gene sequence:
>966_bases ATGGAAGATCTCCTGCGGATAGATGACCTGAGACTGACCTTCGAGACCCATGACGGCCCGGTCAGCGTCCTGCGTGGCGT CGATCTGACGGTCGGAACGGGCGAGCGCGTGGCGCTGGTTGGCGAATCCGGCAGCGGAAAATCCGTAACCGCACGTGTGA TCATGGGGCTATTGCCGCAGCGGCGCATCCGCACCAGCGGCAACCTGCAATTAGACGGCTCCGACGTCCTCAAGGAATCT CCCGCCCGCGCCAAAGGCCGCCGGGGGCGCGACATCACCATGATTTTCCAGGACCCGATGGCCGCTCTCAACCCGGTCTT CACCATCCGGCAGCAATTCGCCGCCGTTCTGACGCGTCTTGACCGACGGCTCAGCACCGCCGAGGCGGAAAGCTGCATGC GCACGGCCCTCCGGGACGTCTCCATTGCGGATCCCGAACGCGTTCTGGACAGCTACAGCTTCCAACTGAGCGGCGGCCTC AACCAGCGTGTCATGATCGCCATGGCCCTGGCGAGCCGGCCGAAGCTGTTGATCGCGGATGAGCCGGGCACCGCGCTCGA CGTGACGGTCCAGCAGCAGACCCTGAACATCATGGCCAACCTCTCCCAGGCTTACGGCACGGCGATCCTGTTCATCTCCC ACAATCTCGGCGTCGTCCGCAAATTCGCCGACCGCGTCTGCGTAATGTATGCGGGGCGGATCGTCGAGAGTGCGCCGACG GATGCGCTTTTCGCCAATCCTCGCCATCCCTATACACGCGCCCTGCTCGCCTCAGTCCCGCGGCTTTCGTCCGACCGGCT CCCGGAGGCTATCGAAGGCTCGGTGCCGGATCTCACCGCGCTCACCGAAGGCTGTGCCTTCCGCCCGCGGTGCCAGTTCT CCCGGCCCGAATGCGAAGCTCCGGTGCCCATGTGGCGGCATGCCGGCCACGGCGTCGCCTGCATCCACGAGGTAAACCCG GCATGA
Upstream 100 bases:
>100_bases GCTTTCCATCACCGCGGGTCTCGCGATCTTCGTGATCGTCCTCGGGTTCAACCTGGTCGCGGACGGCCTGCGCGATCTCT TCGATATCGTTGGATAAGAC
Downstream 100 bases:
>100_bases GCGAGCCGCTGCTCCAGATACGCGAGGCCGCGAAGACCTTTCACGTCGGCAGCTCCGAGGTGAAGGCTCTAAAGGGCGTC AATCTATCGGTCGGCAAGGG
Product: oligopeptide/dipeptide ABC transporter, ATPase subunit
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MEDLLRIDDLRLTFETHDGPVSVLRGVDLTVGTGERVALVGESGSGKSVTARVIMGLLPQRRIRTSGNLQLDGSDVLKES PARAKGRRGRDITMIFQDPMAALNPVFTIRQQFAAVLTRLDRRLSTAEAESCMRTALRDVSIADPERVLDSYSFQLSGGL NQRVMIAMALASRPKLLIADEPGTALDVTVQQQTLNIMANLSQAYGTAILFISHNLGVVRKFADRVCVMYAGRIVESAPT DALFANPRHPYTRALLASVPRLSSDRLPEAIEGSVPDLTALTEGCAFRPRCQFSRPECEAPVPMWRHAGHGVACIHEVNP A
Sequences:
>Translated_321_residues MEDLLRIDDLRLTFETHDGPVSVLRGVDLTVGTGERVALVGESGSGKSVTARVIMGLLPQRRIRTSGNLQLDGSDVLKES PARAKGRRGRDITMIFQDPMAALNPVFTIRQQFAAVLTRLDRRLSTAEAESCMRTALRDVSIADPERVLDSYSFQLSGGL NQRVMIAMALASRPKLLIADEPGTALDVTVQQQTLNIMANLSQAYGTAILFISHNLGVVRKFADRVCVMYAGRIVESAPT DALFANPRHPYTRALLASVPRLSSDRLPEAIEGSVPDLTALTEGCAFRPRCQFSRPECEAPVPMWRHAGHGVACIHEVNP A >Mature_321_residues MEDLLRIDDLRLTFETHDGPVSVLRGVDLTVGTGERVALVGESGSGKSVTARVIMGLLPQRRIRTSGNLQLDGSDVLKES PARAKGRRGRDITMIFQDPMAALNPVFTIRQQFAAVLTRLDRRLSTAEAESCMRTALRDVSIADPERVLDSYSFQLSGGL NQRVMIAMALASRPKLLIADEPGTALDVTVQQQTLNIMANLSQAYGTAILFISHNLGVVRKFADRVCVMYAGRIVESAPT DALFANPRHPYTRALLASVPRLSSDRLPEAIEGSVPDLTALTEGCAFRPRCQFSRPECEAPVPMWRHAGHGVACIHEVNP A
Specific function: Probably part of a binding-protein-dependent transport system y4tOPQRS for a peptide. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=260, Percent_Identity=28.4615384615385, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI9665248, Length=248, Percent_Identity=28.6290322580645, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI171184400, Length=241, Percent_Identity=27.3858921161826, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI27436953, Length=216, Percent_Identity=28.2407407407407, Blast_Score=72, Evalue=9e-13, Organism=Homo sapiens, GI156105685, Length=226, Percent_Identity=31.858407079646, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI255708477, Length=232, Percent_Identity=29.3103448275862, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI21536378, Length=251, Percent_Identity=27.0916334661355, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI9955963, Length=247, Percent_Identity=29.1497975708502, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1787759, Length=300, Percent_Identity=46.3333333333333, Blast_Score=241, Evalue=5e-65, Organism=Escherichia coli, GI48994883, Length=317, Percent_Identity=41.6403785488959, Blast_Score=229, Evalue=2e-61, Organism=Escherichia coli, GI1789963, Length=305, Percent_Identity=40.327868852459, Blast_Score=221, Evalue=4e-59, Organism=Escherichia coli, GI145693107, Length=272, Percent_Identity=42.6470588235294, Blast_Score=213, Evalue=2e-56, Organism=Escherichia coli, GI1787500, Length=331, Percent_Identity=38.0664652567976, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1788506, Length=269, Percent_Identity=46.0966542750929, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1789962, Length=324, Percent_Identity=38.2716049382716, Blast_Score=187, Evalue=7e-49, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=34.2507645259939, Blast_Score=186, Evalue=2e-48, Organism=Escherichia coli, GI1787758, Length=284, Percent_Identity=34.8591549295775, Blast_Score=159, Evalue=2e-40, Organism=Escherichia coli, GI1789890, Length=236, Percent_Identity=36.864406779661, Blast_Score=149, Evalue=3e-37, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=42.2018348623853, Blast_Score=139, Evalue=3e-34, Organism=Escherichia coli, GI1789672, Length=243, Percent_Identity=36.2139917695473, Blast_Score=127, Evalue=7e-31, Organism=Escherichia coli, GI1787547, Length=267, Percent_Identity=31.4606741573034, Blast_Score=124, Evalue=7e-30, Organism=Escherichia coli, GI1788225, Length=238, Percent_Identity=35.7142857142857, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI48994997, Length=239, Percent_Identity=32.2175732217573, Blast_Score=113, Evalue=2e-26, Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=36.6379310344828, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788761, Length=261, Percent_Identity=31.8007662835249, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=31.3559322033898, Blast_Score=106, Evalue=2e-24, Organism=Escherichia coli, GI1786398, Length=305, Percent_Identity=28.5245901639344, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1787370, Length=260, Percent_Identity=29.6153846153846, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790162, Length=241, Percent_Identity=28.6307053941909, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1786703, Length=238, Percent_Identity=31.5126050420168, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1787712, Length=241, Percent_Identity=30.2904564315353, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786872, Length=219, Percent_Identity=31.5068493150685, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87081791, Length=251, Percent_Identity=30.2788844621514, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=29.6943231441048, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI1786319, Length=236, Percent_Identity=30.0847457627119, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787089, Length=236, Percent_Identity=33.4745762711864, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI87081834, Length=232, Percent_Identity=31.8965517241379, Blast_Score=88, Evalue=9e-19, Organism=Escherichia coli, GI1787105, Length=241, Percent_Identity=33.195020746888, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1790467, Length=245, Percent_Identity=26.9387755102041, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=30.0448430493274, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787792, Length=237, Percent_Identity=30.379746835443, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI1788644, Length=265, Percent_Identity=31.6981132075472, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790544, Length=280, Percent_Identity=27.8571428571429, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786253, Length=248, Percent_Identity=29.4354838709677, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790190, Length=231, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1788450, Length=246, Percent_Identity=25.609756097561, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=31.2236286919831, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87082267, Length=249, Percent_Identity=26.1044176706827, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1787164, Length=212, Percent_Identity=32.0754716981132, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=30.6306306306306, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789873, Length=219, Percent_Identity=27.8538812785388, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786654, Length=231, Percent_Identity=29.4372294372294, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=26.6094420600858, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786803, Length=251, Percent_Identity=25.4980079681275, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787972, Length=249, Percent_Identity=28.9156626506024, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI48995001, Length=218, Percent_Identity=29.8165137614679, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1787182, Length=238, Percent_Identity=27.7310924369748, Blast_Score=65, Evalue=7e-12, Organism=Escherichia coli, GI1789586, Length=239, Percent_Identity=27.1966527196653, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI1786345, Length=216, Percent_Identity=25, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=33.0396475770925, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=33.0396475770925, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=33.0396475770925, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=29.6610169491525, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17569145, Length=243, Percent_Identity=29.2181069958848, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17569143, Length=250, Percent_Identity=28, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI25146777, Length=241, Percent_Identity=29.045643153527, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17541710, Length=245, Percent_Identity=29.7959183673469, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71992290, Length=234, Percent_Identity=29.4871794871795, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI115535101, Length=227, Percent_Identity=31.2775330396476, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193208177, Length=256, Percent_Identity=27.734375, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=27.5555555555556, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71992285, Length=242, Percent_Identity=28.5123966942149, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533592, Length=253, Percent_Identity=28.4584980237154, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193209708, Length=236, Percent_Identity=27.9661016949153, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=255, Percent_Identity=27.0588235294118, Blast_Score=78, Evalue=1e-15, Organism=Drosophila melanogaster, GI85726357, Length=263, Percent_Identity=27.7566539923954, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI17136662, Length=230, Percent_Identity=29.1304347826087, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24666092, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35014; Mature: 35014
Theoretical pI: Translated: 8.14; Mature: 8.14
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEDLLRIDDLRLTFETHDGPVSVLRGVDLTVGTGERVALVGESGSGKSVTARVIMGLLPQ CCCHHEECCEEEEEECCCCHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCH RRIRTSGNLQLDGSDVLKESPARAKGRRGRDITMIFQDPMAALNPVFTIRQQFAAVLTRL HHHCCCCCEEECCHHHHHCCCCHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH DRRLSTAEAESCMRTALRDVSIADPERVLDSYSFQLSGGLNQRVMIAMALASRPKLLIAD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEECCCCCHHHHEEEHHCCCCEEEEEC EPGTALDVTVQQQTLNIMANLSQAYGTAILFISHNLGVVRKFADRVCVMYAGRIVESAPT CCCCEEEEEEHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC DALFANPRHPYTRALLASVPRLSSDRLPEAIEGSVPDLTALTEGCAFRPRCQFSRPECEA CCEECCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCC PVPMWRHAGHGVACIHEVNPA CCCHHHHCCCCEEEEEECCCC >Mature Secondary Structure MEDLLRIDDLRLTFETHDGPVSVLRGVDLTVGTGERVALVGESGSGKSVTARVIMGLLPQ CCCHHEECCEEEEEECCCCHHHHHCCCEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCH RRIRTSGNLQLDGSDVLKESPARAKGRRGRDITMIFQDPMAALNPVFTIRQQFAAVLTRL HHHCCCCCEEECCHHHHHCCCCHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH DRRLSTAEAESCMRTALRDVSIADPERVLDSYSFQLSGGLNQRVMIAMALASRPKLLIAD HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEECCCCCHHHHEEEHHCCCCEEEEEC EPGTALDVTVQQQTLNIMANLSQAYGTAILFISHNLGVVRKFADRVCVMYAGRIVESAPT CCCCEEEEEEHHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCC DALFANPRHPYTRALLASVPRLSSDRLPEAIEGSVPDLTALTEGCAFRPRCQFSRPECEA CCEECCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHHHHCCCCCCCCCCCCCCCCCC PVPMWRHAGHGVACIHEVNPA CCCHHHHCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8796346; 9163424 [H]