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The map label for this gene is rbsC [H]

Identifier: 110633959

GI number: 110633959

Start: 1730258

End: 1731238

Strand: Direct

Name: rbsC [H]

Synonym: Meso_1607

Alternate gene names: 110633959

Gene position: 1730258-1731238 (Clockwise)

Preceding gene: 110633958

Following gene: 110633960

Centisome position: 39.21

GC content: 60.65

Gene sequence:

>981_bases
ATGAAACAGTCGCTCGGCGATCGCATCCTGAATATCGAGTGGCTGCCGCTCCTCGTCCTGGCATTTGTCGGCATCCTCGT
GCTGTCGATGATATCGAGCAATTTCTTGAGCAGCTACAACCTGTTCGTGATCCTGCGCATCCTGTCGGTGACCAGCCTCG
TGGCGCTGTCACAGATGGTGGTGATAGCAATCGGCCAGATGAACCTGGCAGTCGGAGCGATCGGCGGCCTTGTGGCAATT
CTGTTCGGCGCGCTGCTGGAGCTCTACCATGTGTCCATCCCGCTCGCCTTTTTGGCAGGCCTCGCTGTCGGCATCGCCTG
CGGCGCGCTCAGTGGCTGGCTCATCGCCTGGACGAAGATCAGCGGCTTCATCATCACGCTTGCGATGCTTTCTGTTTTCA
CCGGCTTGAACTACGGCATCACCAAGAGCATTCCGTTCTACAACATGCCACAAGCCCTCAAGGCCTGGTACGACAGCTAC
GTGGGGCCAGTACCCCTTATCCTGTTTATTCCCCTCATCGCGATGGTTGCAGTCGCCGTCATCCTCCACCACACGAGAGC
CGGCCGACAGATGCTGGCGATGGGCGGCAATCCCGCCGCCGCGGAACTGGCCGGCATCTCGCTGATGCGGACGACCATCA
TGGCGCACACCCTTTCCGGCGCTCTCGCCGCCATTGCAGGAATGGTGGCCGTGGCGCGTCTCGGCACCGCCGAGCCTACG
ATCGGATCGGACTGGCTGCTGGCGTCGTTCGCCGCACCTGTCATAGGCGGGGCCATTTTGACGGGCGGCCATGTCTCTGT
CATCGGCACGATGATTGCTGTGCTGATTGTTGTCCTGCTGGAGAACGGCCTGATCCTCGCCGGTACCAATCCCTTCTACA
TCCCGTTCTTCCTTGGCGCGCTGATCCTGCTTACGGTCCTCTTCAATCACTGGCGTAACTCCGCGCGGTCCTCTCCGCTG
TTGAGGAGGGGAGGGCACTGA

Upstream 100 bases:

>100_bases
GTTTCTGGATCCAGTTTTTCCTCGGCCTCGCCCTGCTGGCAGCGGTCGGCATCGATCGTTGGCGCAGCGTCACCGCCGAA
CGCAGAGGAATGGTCAGTCG

Downstream 100 bases:

>100_bases
TGACACCGCTCCTGGAAGTCCGCGGCGCCACGAAAGCCTTTCCGGGCGTCAAAGCACTCGATGGGGTGAACCTGACTTTG
CGTGCGGGCGAGATCCACGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MKQSLGDRILNIEWLPLLVLAFVGILVLSMISSNFLSSYNLFVILRILSVTSLVALSQMVVIAIGQMNLAVGAIGGLVAI
LFGALLELYHVSIPLAFLAGLAVGIACGALSGWLIAWTKISGFIITLAMLSVFTGLNYGITKSIPFYNMPQALKAWYDSY
VGPVPLILFIPLIAMVAVAVILHHTRAGRQMLAMGGNPAAAELAGISLMRTTIMAHTLSGALAAIAGMVAVARLGTAEPT
IGSDWLLASFAAPVIGGAILTGGHVSVIGTMIAVLIVVLLENGLILAGTNPFYIPFFLGALILLTVLFNHWRNSARSSPL
LRRGGH

Sequences:

>Translated_326_residues
MKQSLGDRILNIEWLPLLVLAFVGILVLSMISSNFLSSYNLFVILRILSVTSLVALSQMVVIAIGQMNLAVGAIGGLVAI
LFGALLELYHVSIPLAFLAGLAVGIACGALSGWLIAWTKISGFIITLAMLSVFTGLNYGITKSIPFYNMPQALKAWYDSY
VGPVPLILFIPLIAMVAVAVILHHTRAGRQMLAMGGNPAAAELAGISLMRTTIMAHTLSGALAAIAGMVAVARLGTAEPT
IGSDWLLASFAAPVIGGAILTGGHVSVIGTMIAVLIVVLLENGLILAGTNPFYIPFFLGALILLTVLFNHWRNSARSSPL
LRRGGH
>Mature_326_residues
MKQSLGDRILNIEWLPLLVLAFVGILVLSMISSNFLSSYNLFVILRILSVTSLVALSQMVVIAIGQMNLAVGAIGGLVAI
LFGALLELYHVSIPLAFLAGLAVGIACGALSGWLIAWTKISGFIITLAMLSVFTGLNYGITKSIPFYNMPQALKAWYDSY
VGPVPLILFIPLIAMVAVAVILHHTRAGRQMLAMGGNPAAAELAGISLMRTTIMAHTLSGALAAIAGMVAVARLGTAEPT
IGSDWLLASFAAPVIGGAILTGGHVSVIGTMIAVLIVVLLENGLILAGTNPFYIPFFLGALILLTVLFNHWRNSARSSPL
LRRGGH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=317, Percent_Identity=34.384858044164, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1788896, Length=312, Percent_Identity=31.0897435897436, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI145693152, Length=287, Percent_Identity=28.9198606271777, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI87082395, Length=327, Percent_Identity=30.8868501529052, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790524, Length=302, Percent_Identity=29.1390728476821, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787794, Length=244, Percent_Identity=35.2459016393443, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788471, Length=287, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=37.8787878787879, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787793, Length=296, Percent_Identity=28.0405405405405, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34282; Mature: 34282

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQSLGDRILNIEWLPLLVLAFVGILVLSMISSNFLSSYNLFVILRILSVTSLVALSQMV
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAIGQMNLAVGAIGGLVAILFGALLELYHVSIPLAFLAGLAVGIACGALSGWLIAWTKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGFIITLAMLSVFTGLNYGITKSIPFYNMPQALKAWYDSYVGPVPLILFIPLIAMVAVAV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ILHHTRAGRQMLAMGGNPAAAELAGISLMRTTIMAHTLSGALAAIAGMVAVARLGTAEPT
HHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IGSDWLLASFAAPVIGGAILTGGHVSVIGTMIAVLIVVLLENGLILAGTNPFYIPFFLGA
CCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCEEHHHHHHH
LILLTVLFNHWRNSARSSPLLRRGGH
HHHHHHHHHHHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MKQSLGDRILNIEWLPLLVLAFVGILVLSMISSNFLSSYNLFVILRILSVTSLVALSQMV
CCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAIGQMNLAVGAIGGLVAILFGALLELYHVSIPLAFLAGLAVGIACGALSGWLIAWTKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SGFIITLAMLSVFTGLNYGITKSIPFYNMPQALKAWYDSYVGPVPLILFIPLIAMVAVAV
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
ILHHTRAGRQMLAMGGNPAAAELAGISLMRTTIMAHTLSGALAAIAGMVAVARLGTAEPT
HHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
IGSDWLLASFAAPVIGGAILTGGHVSVIGTMIAVLIVVLLENGLILAGTNPFYIPFFLGA
CCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCEEHHHHHHH
LILLTVLFNHWRNSARSSPLLRRGGH
HHHHHHHHHHHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]