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The map label for this gene is ybaO [H]

Identifier: 110633919

GI number: 110633919

Start: 1683971

End: 1684462

Strand: Reverse

Name: ybaO [H]

Synonym: Meso_1566

Alternate gene names: 110633919

Gene position: 1684462-1683971 (Counterclockwise)

Preceding gene: 110633920

Following gene: 110633910

Centisome position: 38.18

GC content: 56.5

Gene sequence:

>492_bases
ATGGATCGCCTTGATCGAAAAATACTCCGTCTGCTGCAGGAGAACGCCACGCTCGCGGTGGCGGACATAGCAAAGAAAGT
CGGACTTTCGACCACACCATGCTGGAGAAGGATCCAGAAGCTGGAAGAAGAAGGCGTGATCCGCAGGCGGGTGGCGCTGC
TCGATCCGGCCAAGGTGAACGCGCGAGTGACGGTCTTCGTGTCCATTCGCACGAATGCGCATAGCCATGAGTGGCTACGC
CGGTTTTCCGAGGTGATCAAAGAGTTCCCGGAGGTGGTGGAATTCTATCGCATGAGCGGCGACGTCGACTATCTGCTGCG
CGTCGTCGTGCCGGACATCGCGGCTTACGACGCCTTCTATAAGAAGCTTATCTCCAAGATCGAGATCCGGGACGTGTCCT
CTGCCTTCGCCATGGAGCAGATCAAGTACACGACTGAATTGCCGCTCGACTATCTTGTGCTCGACAAGGAATCTGCAAGC
GCAGCGGTTTAA

Upstream 100 bases:

>100_bases
CCCTGAAAGGCGAAGGGTGTTTTGGCTTCATGAGAAAATTGTTATTGTTTTTCGGTCGAAATGGGTCCATTCCAGAAATA
TAATTCTAATGGAGAATTCC

Downstream 100 bases:

>100_bases
CGGTCTAAGAAAATGGCCCGAATAGGTCGGGCCTTTTCCACCTTTTCTTATCTCTCAAGCCGCGCCAGCAGCGAGGATGT
GTCCCAGCGGCGGCCGCCCA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MDRLDRKILRLLQENATLAVADIAKKVGLSTTPCWRRIQKLEEEGVIRRRVALLDPAKVNARVTVFVSIRTNAHSHEWLR
RFSEVIKEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKKLISKIEIRDVSSAFAMEQIKYTTELPLDYLVLDKESAS
AAV

Sequences:

>Translated_163_residues
MDRLDRKILRLLQENATLAVADIAKKVGLSTTPCWRRIQKLEEEGVIRRRVALLDPAKVNARVTVFVSIRTNAHSHEWLR
RFSEVIKEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKKLISKIEIRDVSSAFAMEQIKYTTELPLDYLVLDKESAS
AAV
>Mature_163_residues
MDRLDRKILRLLQENATLAVADIAKKVGLSTTPCWRRIQKLEEEGVIRRRVALLDPAKVNARVTVFVSIRTNAHSHEWLR
RFSEVIKEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFYKKLISKIEIRDVSSAFAMEQIKYTTELPLDYLVLDKESAS
AAV

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=50.9933774834437, Blast_Score=175, Evalue=1e-45,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=34.4594594594595, Blast_Score=106, Evalue=7e-25,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 18773; Mature: 18773

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRLDRKILRLLQENATLAVADIAKKVGLSTTPCWRRIQKLEEEGVIRRRVALLDPAKVN
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ARVTVFVSIRTNAHSHEWLRRFSEVIKEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFY
EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KKLISKIEIRDVSSAFAMEQIKYTTELPLDYLVLDKESASAAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
>Mature Secondary Structure
MDRLDRKILRLLQENATLAVADIAKKVGLSTTPCWRRIQKLEEEGVIRRRVALLDPAKVN
CCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ARVTVFVSIRTNAHSHEWLRRFSEVIKEFPEVVEFYRMSGDVDYLLRVVVPDIAAYDAFY
EEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KKLISKIEIRDVSSAFAMEQIKYTTELPLDYLVLDKESASAAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]