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The map label for this gene is yddE [C]

Identifier: 110633852

GI number: 110633852

Start: 1595665

End: 1596585

Strand: Direct

Name: yddE [C]

Synonym: Meso_1499

Alternate gene names: 110633852

Gene position: 1595665-1596585 (Clockwise)

Preceding gene: 110633851

Following gene: 110633855

Centisome position: 36.16

GC content: 61.67

Gene sequence:

>921_bases
GTGAAAGCAAGACGCTATCTGATCTATGACGTTTTCACGGACACGCAGCTTGCCGGAAACCCATTGGCTATCGTTCTCGA
TTCCGATGGGCTGGACGATCAGCGCATGCAGCGCATTGCCGGGGAGTTCAACCTGTCGGAGACGGCTTTTGTCCTACCGC
CTGAAAACCGGCTGCATACCGCTCGTGTGCGGATTTTCACGCCTCGCACGGAATTGCCCTTTGCCGGTCATCCCACGGTG
GGAACGGCTACGGCCCTGGCGGAGCAAGCGGGCAAGACACGCGGTAAAGGCGAGGGCGCTTCGCTTCTCGTACTTGAGGA
AAATGTCGGCCCGGTGCGGTGCGCAGTTTCAACTGGTGCTGGCGCCACCTTTGCCGAATTTGATCTTCCGCGCCTGCCCA
AGCGCATTCCCTTCGAAACCCCTGCGGAAGCCGTGGCCGCAGCACTCGGGATCCCGCATCATGAGATTGGATTCGAGAAC
CACGTCATCGGCGCCTGGTCGGCGGGCGTGCCATATGTCTGTGTGCCCGTTGCCGATCTTGATGTCGCGGGCAGGGTGCG
GCTCGATGAAAGGCTTTGGGACGAGATCGTCCTGCAGAATCCTGCGGTCATTGGGTTTCCCTACGTTTATTGCCGGGAAA
CCGTGAACCACGACTGCTCTTTTCACACACGCATGTTCGCCCCTCAGGACGGCATCCCGGAAGACCCGGCGACCGGTTCG
GCCGCGGCTGCTTTCGCCGGCGCGATCCTCACCCATGACGAACCGGTGGACGGCATTCACCGCTACTGGCTGGAACAGGG
CATCGAGATGGGGCGGCCATCGCGCATTCGGCTTGAAATCGAGGCGGCAGCCGGCGGGATAGAGGCGGCGCGCATTGGCG
GAGCCGCCGTCAAGCTGGCGGAGGGAACCTTATTCGCCTGA

Upstream 100 bases:

>100_bases
ATTTGATCTGAGCGCTTGAGCCCACACACGGTTCCAAATCTGTATTATAGGTGGACCAAGGGCTTTCTGCCGATTTTCAG
GTAACCGGGAGAGGTGTGCC

Downstream 100 bases:

>100_bases
CCTCGGGGGAGGGAAGTTCTTTCCACCCCTGTGGCTCCTCAATGCGGCGACCTAATTTCTCGGTGAGGTTCGTGTAACGG
CGCGGATCTTTGATTCCTCT

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MKARRYLIYDVFTDTQLAGNPLAIVLDSDGLDDQRMQRIAGEFNLSETAFVLPPENRLHTARVRIFTPRTELPFAGHPTV
GTATALAEQAGKTRGKGEGASLLVLEENVGPVRCAVSTGAGATFAEFDLPRLPKRIPFETPAEAVAAALGIPHHEIGFEN
HVIGAWSAGVPYVCVPVADLDVAGRVRLDERLWDEIVLQNPAVIGFPYVYCRETVNHDCSFHTRMFAPQDGIPEDPATGS
AAAAFAGAILTHDEPVDGIHRYWLEQGIEMGRPSRIRLEIEAAAGGIEAARIGGAAVKLAEGTLFA

Sequences:

>Translated_306_residues
MKARRYLIYDVFTDTQLAGNPLAIVLDSDGLDDQRMQRIAGEFNLSETAFVLPPENRLHTARVRIFTPRTELPFAGHPTV
GTATALAEQAGKTRGKGEGASLLVLEENVGPVRCAVSTGAGATFAEFDLPRLPKRIPFETPAEAVAAALGIPHHEIGFEN
HVIGAWSAGVPYVCVPVADLDVAGRVRLDERLWDEIVLQNPAVIGFPYVYCRETVNHDCSFHTRMFAPQDGIPEDPATGS
AAAAFAGAILTHDEPVDGIHRYWLEQGIEMGRPSRIRLEIEAAAGGIEAARIGGAAVKLAEGTLFA
>Mature_306_residues
MKARRYLIYDVFTDTQLAGNPLAIVLDSDGLDDQRMQRIAGEFNLSETAFVLPPENRLHTARVRIFTPRTELPFAGHPTV
GTATALAEQAGKTRGKGEGASLLVLEENVGPVRCAVSTGAGATFAEFDLPRLPKRIPFETPAEAVAAALGIPHHEIGFEN
HVIGAWSAGVPYVCVPVADLDVAGRVRLDERLWDEIVLQNPAVIGFPYVYCRETVNHDCSFHTRMFAPQDGIPEDPATGS
AAAAFAGAILTHDEPVDGIHRYWLEQGIEMGRPSRIRLEIEAAAGGIEAARIGGAAVKLAEGTLFA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17542160, Length=305, Percent_Identity=27.8688524590164, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17542154, Length=305, Percent_Identity=27.8688524590164, Blast_Score=79, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321818, Length=305, Percent_Identity=26.2295081967213, Blast_Score=91, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32914; Mature: 32914

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKARRYLIYDVFTDTQLAGNPLAIVLDSDGLDDQRMQRIAGEFNLSETAFVLPPENRLHT
CCCCEEEEEEEEECCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEE
ARVRIFTPRTELPFAGHPTVGTATALAEQAGKTRGKGEGASLLVLEENVGPVRCAVSTGA
EEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCC
GATFAEFDLPRLPKRIPFETPAEAVAAALGIPHHEIGFENHVIGAWSAGVPYVCVPVADL
CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEECCCCCEEEEEECCC
DVAGRVRLDERLWDEIVLQNPAVIGFPYVYCRETVNHDCSFHTRMFAPQDGIPEDPATGS
CCCCCEEHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
AAAAFAGAILTHDEPVDGIHRYWLEQGIEMGRPSRIRLEIEAAAGGIEAARIGGAAVKLA
HHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCCCEEEEEE
EGTLFA
CCCCCC
>Mature Secondary Structure
MKARRYLIYDVFTDTQLAGNPLAIVLDSDGLDDQRMQRIAGEFNLSETAFVLPPENRLHT
CCCCEEEEEEEEECCEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEE
ARVRIFTPRTELPFAGHPTVGTATALAEQAGKTRGKGEGASLLVLEENVGPVRCAVSTGA
EEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEECCC
GATFAEFDLPRLPKRIPFETPAEAVAAALGIPHHEIGFENHVIGAWSAGVPYVCVPVADL
CCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCCCEEEEECCCCCEEEEEECCC
DVAGRVRLDERLWDEIVLQNPAVIGFPYVYCRETVNHDCSFHTRMFAPQDGIPEDPATGS
CCCCCEEHHHHHHHHHHHCCCCEEECCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
AAAAFAGAILTHDEPVDGIHRYWLEQGIEMGRPSRIRLEIEAAAGGIEAARIGGAAVKLA
HHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCCCEEEEEE
EGTLFA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]