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The map label for this gene is yrrC [H]

Identifier: 110633844

GI number: 110633844

Start: 1588191

End: 1589318

Strand: Direct

Name: yrrC [H]

Synonym: Meso_1491

Alternate gene names: 110633844

Gene position: 1588191-1589318 (Clockwise)

Preceding gene: 110633843

Following gene: 110633846

Centisome position: 35.99

GC content: 61.44

Gene sequence:

>1128_bases
ATGGAATTTTCGCCGCAACAGGACGAGGCGCTGAAGGCCGTCGCGCGCTGGCTGAAGAGCGGCAGCTCTCAGCTTTTCCG
CCTTTTCGGCTATGCAGGCACGGGCAAGACCACACTTGCGCGGCACTTTGCCGAGCATGTGGATGGGGACGTGCAGTTCG
CTGCCTTTACGGGCAAAGCGGCGCAGGTGCTGCGCTCGAAGGGCGCTTCGAACGCCCGCACCATCCATTCGCTCATTTAC
CGCCCCCGCGGGGAAGAGCAGGTGGAGGATGAAACGACCGGCAAGACGCTGATTTCTCCGACCTTCTCGATCAACCGGCA
GAGCCCGATCGCCAAGGCGAAGCTCGTGATCATCGATGAGTGTTCGATGGTGGACGAGGAACTGGGCCGCGACCTCATGT
CCTTCGGAACACCAATCCTTGTGCTGGGAGACCCTGGGCAGCTGCCTCCAATTTCCGGCGGTGGCTATTTCACCGAGCAC
GAGCCGGACTTCCTGCTCACCGAAATCCACCGCCAGGCGCGCGACAATCCCATCATCCGGCTTGCGCTGGACGTGCGTGA
GGGGCGCGAATTCACATACGGGGATTACGGCACGGCGCAGGTGATCCCGAGAGGTGCCGTCAACAGCGATATCGTGTTGG
CGGCGGACCAGGTGCTGGTTGGGGTGAACCGCACCCGGCGCCGCTATAACCAGCGCCTGAGAGAATTGAAGGGCTTTGAG
GCTTTCTATCCGCAGGCTGGCGACAAGCTGGTTTGTCTTCGCAACGATCCCGCCAAGGGTCTCCTGAACGGATCCCTCTG
GAAGGTGATGACCTCCTCGCGGGAGACGGTGAAGCCGGGCATCAACCTGCTTGTTTCGCCGGAGGAGGATGATCCGGACC
GCGGCGTGGCGAAGATCAAGCTCTTGAAAGCCGCCTTCGAAGATCCTGACGGCGACATTCCCTGGCAGACCAAGAAGCGC
TATGACGACTTCGATTTCGGCTACGCGCTCACCGTGCATAAGGCGCAAGGCTCGCAGTGGAATGACGTTGTGCTTTTCGA
CGAGAGTTTTGCTTTCCGCGACACGCGCCAGCGCTGGCTCTATACGGCGATCACGCGCGCCGCGGAGCGCCTGACGATCG
TGCGTTGA

Upstream 100 bases:

>100_bases
GATTAGCGCTCGCCGCGACGCTTTGGCCCATGCTGCGATAGCTGGCAGGAACTGCACGAGCAGCCCTGTTCAGACGCGCC
AGAATCTGATTTCTGGGCGC

Downstream 100 bases:

>100_bases
TCAGGTAGAGGCGGGCAGGGGCCTGGCGCCGAGCCATTCCCATGCGGCTTCCGCTTGCTCCAGCTCGAAATGTTTCATCT
CGACCGAAAGGAAGGGCTTC

Product: exonuclease V subunit alpha

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MEFSPQQDEALKAVARWLKSGSSQLFRLFGYAGTGKTTLARHFAEHVDGDVQFAAFTGKAAQVLRSKGASNARTIHSLIY
RPRGEEQVEDETTGKTLISPTFSINRQSPIAKAKLVIIDECSMVDEELGRDLMSFGTPILVLGDPGQLPPISGGGYFTEH
EPDFLLTEIHRQARDNPIIRLALDVREGREFTYGDYGTAQVIPRGAVNSDIVLAADQVLVGVNRTRRRYNQRLRELKGFE
AFYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIKLLKAAFEDPDGDIPWQTKKR
YDDFDFGYALTVHKAQGSQWNDVVLFDESFAFRDTRQRWLYTAITRAAERLTIVR

Sequences:

>Translated_375_residues
MEFSPQQDEALKAVARWLKSGSSQLFRLFGYAGTGKTTLARHFAEHVDGDVQFAAFTGKAAQVLRSKGASNARTIHSLIY
RPRGEEQVEDETTGKTLISPTFSINRQSPIAKAKLVIIDECSMVDEELGRDLMSFGTPILVLGDPGQLPPISGGGYFTEH
EPDFLLTEIHRQARDNPIIRLALDVREGREFTYGDYGTAQVIPRGAVNSDIVLAADQVLVGVNRTRRRYNQRLRELKGFE
AFYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIKLLKAAFEDPDGDIPWQTKKR
YDDFDFGYALTVHKAQGSQWNDVVLFDESFAFRDTRQRWLYTAITRAAERLTIVR
>Mature_375_residues
MEFSPQQDEALKAVARWLKSGSSQLFRLFGYAGTGKTTLARHFAEHVDGDVQFAAFTGKAAQVLRSKGASNARTIHSLIY
RPRGEEQVEDETTGKTLISPTFSINRQSPIAKAKLVIIDECSMVDEELGRDLMSFGTPILVLGDPGQLPPISGGGYFTEH
EPDFLLTEIHRQARDNPIIRLALDVREGREFTYGDYGTAQVIPRGAVNSDIVLAADQVLVGVNRTRRRYNQRLRELKGFE
AFYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIKLLKAAFEDPDGDIPWQTKKR
YDDFDFGYALTVHKAQGSQWNDVVLFDESFAFRDTRQRWLYTAITRAAERLTIVR

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 42011; Mature: 42011

Theoretical pI: Translated: 7.15; Mature: 7.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSPQQDEALKAVARWLKSGSSQLFRLFGYAGTGKTTLARHFAEHVDGDVQFAAFTGKA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCHH
AQVLRSKGASNARTIHSLIYRPRGEEQVEDETTGKTLISPTFSINRQSPIAKAKLVIIDE
HHHHHHCCCCCHHHHHHHHHCCCCCHHCCHHCCCCEEECCCEECCCCCCCCEEEEEEEEC
CSMVDEELGRDLMSFGTPILVLGDPGQLPPISGGGYFTEHEPDFLLTEIHRQARDNPIIR
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
LALDVREGREFTYGDYGTAQVIPRGAVNSDIVLAADQVLVGVNRTRRRYNQRLRELKGFE
EEEEECCCCCEECCCCCCCEEEECCCCCCCEEEEECHHEECCHHHHHHHHHHHHHHCCCH
AFYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIK
HCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCHHHHH
LLKAAFEDPDGDIPWQTKKRYDDFDFGYALTVHKAQGSQWNDVVLFDESFAFRDTRQRWL
HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHH
YTAITRAAERLTIVR
HHHHHHHHHHHEECC
>Mature Secondary Structure
MEFSPQQDEALKAVARWLKSGSSQLFRLFGYAGTGKTTLARHFAEHVDGDVQFAAFTGKA
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEECCHH
AQVLRSKGASNARTIHSLIYRPRGEEQVEDETTGKTLISPTFSINRQSPIAKAKLVIIDE
HHHHHHCCCCCHHHHHHHHHCCCCCHHCCHHCCCCEEECCCEECCCCCCCCEEEEEEEEC
CSMVDEELGRDLMSFGTPILVLGDPGQLPPISGGGYFTEHEPDFLLTEIHRQARDNPIIR
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
LALDVREGREFTYGDYGTAQVIPRGAVNSDIVLAADQVLVGVNRTRRRYNQRLRELKGFE
EEEEECCCCCEECCCCCCCEEEECCCCCCCEEEEECHHEECCHHHHHHHHHHHHHHCCCH
AFYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIK
HCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCHHHHH
LLKAAFEDPDGDIPWQTKKRYDDFDFGYALTVHKAQGSQWNDVVLFDESFAFRDTRQRWL
HHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHH
YTAITRAAERLTIVR
HHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]