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The map label for this gene is ydcN [C]

Identifier: 110633833

GI number: 110633833

Start: 1577465

End: 1578061

Strand: Reverse

Name: ydcN [C]

Synonym: Meso_1480

Alternate gene names: 110633833

Gene position: 1578061-1577465 (Counterclockwise)

Preceding gene: 110633836

Following gene: 110633832

Centisome position: 35.76

GC content: 64.15

Gene sequence:

>597_bases
ATGTCCACGTCCTTCGAACGCGCGGAAACGGATCTGAAAACCAAGGCGCTTCGGCTCCTGGCGAGCGATATCCGCCGGTT
GCGCAAGGCGCGCGGCCTCACGCTTGCCGGCCTGGCATCGCAACTTGGCCGGTCGGTCGGATGGCTGAGCCAGGTGGAAA
GAGGCATTTCGCTTCCCAGTGTCGCCGACCTGCGCGCGCTCGCCAATCATTTCAAAGTCCCCGTAAGCTTCTTCCTCACA
CCCGCGGCATCGGACGAGAAGGAGTTGCAGGTGGTCGTGCGCGCGGACAAGCGCCGCAAGCTCGTATCCGGCCAGCCCCG
CGTGCTTGAGGAGCTTCTATCGCCGAACCTCGGAGGCCGGTTCGAAATCATCTGCTGTGAGTTTGCGGGCAATACGCCGC
TGCCCCAGCCGCGAAAACGCGCCGCCGAAGAGGCCGGTTATGTGGTTTCCGGCGCGCTCGACATCGAAGTCACCGGAAAG
TGGTACGAGCTTTCGGCGGGCGACAGCTTTCGCGTGCGCGGCGAGACCCTCCGGTGGCGCAACCCGCATGAGGAACCTGC
GATCGTGGTCTGGGTCGTCTCACCGCCGGTCTACTAA

Upstream 100 bases:

>100_bases
GTGACCGCCGGAGGCGAAGTGTTTGCGGCCCGCACAGTGAAAATCCCCTTGATTTTTTCATACAGGCTGGTTTCATGAAT
TTCCAGAGGAAAATTTCACG

Downstream 100 bases:

>100_bases
CGTTCCCGACGAAAGCAGGGCTTGACAATCTGAACCGTGGAGAAGACGGCTTTGCCGTAAAATTGGCCCCGAAGCCATCA
AATAAGAGTAGATTCATGCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Regulatory Protein; Helix-Turn-Helix Domain Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Xre Familiy; XRE Family-Like Protein

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSTSFERAETDLKTKALRLLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVADLRALANHFKVPVSFFLT
PAASDEKELQVVVRADKRRKLVSGQPRVLEELLSPNLGGRFEIICCEFAGNTPLPQPRKRAAEEAGYVVSGALDIEVTGK
WYELSAGDSFRVRGETLRWRNPHEEPAIVVWVVSPPVY

Sequences:

>Translated_198_residues
MSTSFERAETDLKTKALRLLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVADLRALANHFKVPVSFFLT
PAASDEKELQVVVRADKRRKLVSGQPRVLEELLSPNLGGRFEIICCEFAGNTPLPQPRKRAAEEAGYVVSGALDIEVTGK
WYELSAGDSFRVRGETLRWRNPHEEPAIVVWVVSPPVY
>Mature_197_residues
STSFERAETDLKTKALRLLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVADLRALANHFKVPVSFFLTP
AASDEKELQVVVRADKRRKLVSGQPRVLEELLSPNLGGRFEIICCEFAGNTPLPQPRKRAAEEAGYVVSGALDIEVTGKW
YELSAGDSFRVRGETLRWRNPHEEPAIVVWVVSPPVY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787704, Length=175, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21935; Mature: 21804

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSFERAETDLKTKALRLLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
VADLRALANHFKVPVSFFLTPAASDEKELQVVVRADKRRKLVSGQPRVLEELLSPNLGGR
HHHHHHHHHHHCCCEEEEEECCCCCHHHEEEEEECCHHHHHCCCCHHHHHHHHCCCCCCE
FEIICCEFAGNTPLPQPRKRAAEEAGYVVSGALDIEVTGKWYELSAGDSFRVRGETLRWR
EEEEEEEECCCCCCCCHHHHHHHHCCEEEEEEEEEEECCCEEEECCCCCEEEECCEECCC
NPHEEPAIVVWVVSPPVY
CCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
STSFERAETDLKTKALRLLASDIRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
VADLRALANHFKVPVSFFLTPAASDEKELQVVVRADKRRKLVSGQPRVLEELLSPNLGGR
HHHHHHHHHHHCCCEEEEEECCCCCHHHEEEEEECCHHHHHCCCCHHHHHHHHCCCCCCE
FEIICCEFAGNTPLPQPRKRAAEEAGYVVSGALDIEVTGKWYELSAGDSFRVRGETLRWR
EEEEEEEECCCCCCCCHHHHHHHHCCEEEEEEEEEEECCCEEEECCCCCEEEECCEECCC
NPHEEPAIVVWVVSPPVY
CCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA