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The map label for this gene is gph [H]

Identifier: 110633811

GI number: 110633811

Start: 1555254

End: 1555949

Strand: Reverse

Name: gph [H]

Synonym: Meso_1458

Alternate gene names: 110633811

Gene position: 1555949-1555254 (Counterclockwise)

Preceding gene: 110633821

Following gene: 110633809

Centisome position: 35.26

GC content: 61.49

Gene sequence:

>696_bases
ATGATATCGCCGATCATCGTGTTCGATCTCGACGGCACGCTCGTCGACACCGCACCCGACTTGCTCGACAGCCTCAATCA
CTGCCTGCGCACGATCGGCTTGCCCGAGGCGGAACCCAAGGAACTCCGCCGCTTCGTGGGTTTCGGAAGCCGTGTGATGA
TCGAGCGGGCTTTTGCCGCGCATGGACGGCCGACAAACAACGAGGAGCTTGAAGCGCTGCAGAAGCTTTTCATCGAGCAC
TACACCGCCGCGATGCCAGGGCTTTCGCGCCCATTTCCCGGCGTTCTGCAAGCCTTGGCGCGCTTTCGCGAGGCCGGCTT
CATCGCGGCTGTGTGCACCAACAAATTCGAAGGCCTCTCACAGGCCCTGCTCGAAGCGCTGGATATCGCGGATCGCTTCG
AGGCAATTTGTGGTTCGGATACATTTGGCCATCGGAAGCCCGACCCGCGTCACCTGACCGATACGATCGAGCGGGCCGGA
GGAGACCGGCATCGCGCCATCATGGTTGGCGATTCGCGTACGGACATCGATACCGCCAAGGCGGCAGGAATCCCTGTTGT
CGCGGTTGATTTCGGCTACACCGACCGGCCGGTGCGCGAGTTCGAGCCGAGCGTCGTCATCTCTCATTTCGACGAATTGA
CCGTGGAGCTTGCGGGCAAGCTGATCAAATCGGCTGCGGGCCAGCCAGTGGCTTGA

Upstream 100 bases:

>100_bases
TGGTGCACCGTATCGGGCAGGCGCCAATGATAGTTCCATAGCCTTCCTTGAAGAATGGGCTCATGCGGGTTATCGCGTGA
GGATCAACGAGGGACGATTC

Downstream 100 bases:

>100_bases
CTTCGCCACCGGGGCTCCCTTATATCGCCGCGCGCTTGGCGATTTGCCGCCGGGCGGGCGCGTAGCTCAGCGGGAGAGCA
CACCCTTCACACGGGTGGGG

Product: phosphoglycolate phosphatase

Products: NA

Alternate protein names: PGP; PGPase [H]

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MISPIIVFDLDGTLVDTAPDLLDSLNHCLRTIGLPEAEPKELRRFVGFGSRVMIERAFAAHGRPTNNEELEALQKLFIEH
YTAAMPGLSRPFPGVLQALARFREAGFIAAVCTNKFEGLSQALLEALDIADRFEAICGSDTFGHRKPDPRHLTDTIERAG
GDRHRAIMVGDSRTDIDTAKAAGIPVVAVDFGYTDRPVREFEPSVVISHFDELTVELAGKLIKSAAGQPVA

Sequences:

>Translated_231_residues
MISPIIVFDLDGTLVDTAPDLLDSLNHCLRTIGLPEAEPKELRRFVGFGSRVMIERAFAAHGRPTNNEELEALQKLFIEH
YTAAMPGLSRPFPGVLQALARFREAGFIAAVCTNKFEGLSQALLEALDIADRFEAICGSDTFGHRKPDPRHLTDTIERAG
GDRHRAIMVGDSRTDIDTAKAAGIPVVAVDFGYTDRPVREFEPSVVISHFDELTVELAGKLIKSAAGQPVA
>Mature_231_residues
MISPIIVFDLDGTLVDTAPDLLDSLNHCLRTIGLPEAEPKELRRFVGFGSRVMIERAFAAHGRPTNNEELEALQKLFIEH
YTAAMPGLSRPFPGVLQALARFREAGFIAAVCTNKFEGLSQALLEALDIADRFEAICGSDTFGHRKPDPRHLTDTIERAG
GDRHRAIMVGDSRTDIDTAKAAGIPVVAVDFGYTDRPVREFEPSVVISHFDELTVELAGKLIKSAAGQPVA

Specific function: Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stres

COG id: COG0546

COG function: function code R; Predicted phosphatases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]

Homologues:

Organism=Escherichia coli, GI1789787, Length=226, Percent_Identity=33.1858407079646, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006439
- InterPro:   IPR006402
- InterPro:   IPR006346
- InterPro:   IPR023198 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: =3.1.3.18 [H]

Molecular weight: Translated: 25193; Mature: 25193

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPIIVFDLDGTLVDTAPDLLDSLNHCLRTIGLPEAEPKELRRFVGFGSRVMIERAFAA
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
HGRPTNNEELEALQKLFIEHYTAAMPGLSRPFPGVLQALARFREAGFIAAVCTNKFEGLS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QALLEALDIADRFEAICGSDTFGHRKPDPRHLTDTIERAGGDRHRAIMVGDSRTDIDTAK
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
AAGIPVVAVDFGYTDRPVREFEPSVVISHFDELTVELAGKLIKSAAGQPVA
HCCCCEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MISPIIVFDLDGTLVDTAPDLLDSLNHCLRTIGLPEAEPKELRRFVGFGSRVMIERAFAA
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
HGRPTNNEELEALQKLFIEHYTAAMPGLSRPFPGVLQALARFREAGFIAAVCTNKFEGLS
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
QALLEALDIADRFEAICGSDTFGHRKPDPRHLTDTIERAGGDRHRAIMVGDSRTDIDTAK
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
AAGIPVVAVDFGYTDRPVREFEPSVVISHFDELTVELAGKLIKSAAGQPVA
HCCCCEEEEECCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]