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The map label for this gene is rpoE [H]

Identifier: 110633800

GI number: 110633800

Start: 1540373

End: 1540951

Strand: Direct

Name: rpoE [H]

Synonym: Meso_1447

Alternate gene names: 110633800

Gene position: 1540373-1540951 (Clockwise)

Preceding gene: 110633799

Following gene: 110633801

Centisome position: 34.91

GC content: 62.18

Gene sequence:

>579_bases
ATGGCACCGTCCCGATATGAGAGAGACAGCGCCCCCAGGCATCCCGGCTCCGAGATCGTAGACCTCATTCCCGCGCTGCG
CGCTTTCGCGAGAACCTTCTACCGCGACCCGAACGATGCCGACGACCTGGTGCAGGAGACGCTGACGAAAGGCCTTTCAC
ACCTGCATCAGTTCGAAGCCGGGACCAGCATGAAGTCCTGGCTTTTCACGATCATGCGCAACACGTTCTACACCAAGATC
AAGGTAGCCAAGCGGGAAGCGCCGGGAACGGCCGATTGCGTTTCCGCGCGGCCGGTGGTGAACGCCACCCAGGAATGGTC
GGCGCGCGGTCTTGAGATTCACCATGCCATTCAGCGGCTGCCTGAGCAGCAGCGCGAGGTGATGATGCTGATCGGCGTGC
TCGGGATGAGCTATGAGGAAGCCGCCACCATCTGCAATTGCGCCATAGGCACAATCAAGAGCCGGCTTAACCGCGCCCGT
CTGCGGCTTCTGGTCGAGCTTGGGGAGAAATCCAGCCTCTCCGCCGTGGAGCGGGAGGAGGCGACGCCTGCCGGCGACAA
CGGTATCTTCTACGCCTGA

Upstream 100 bases:

>100_bases
TTTCTTTGCCAAGTTCCTCCGGCTTTTGGAACTCCCACCGCCATCGCGCATTAATCCCGCGAACAGCCGAAAAGATTCGT
CGTAAGAGAAGGGATTTGGA

Downstream 100 bases:

>100_bases
CATTCGTCTTTCGCCCTTGTGATTTTTTTGCGTTGCACAATCATTGTGCATGCGCAAAATAGAGGCATGTCGCCTCGGTC
GCTTTCTGTCCTGGTTATCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MAPSRYERDSAPRHPGSEIVDLIPALRAFARTFYRDPNDADDLVQETLTKGLSHLHQFEAGTSMKSWLFTIMRNTFYTKI
KVAKREAPGTADCVSARPVVNATQEWSARGLEIHHAIQRLPEQQREVMMLIGVLGMSYEEAATICNCAIGTIKSRLNRAR
LRLLVELGEKSSLSAVEREEATPAGDNGIFYA

Sequences:

>Translated_192_residues
MAPSRYERDSAPRHPGSEIVDLIPALRAFARTFYRDPNDADDLVQETLTKGLSHLHQFEAGTSMKSWLFTIMRNTFYTKI
KVAKREAPGTADCVSARPVVNATQEWSARGLEIHHAIQRLPEQQREVMMLIGVLGMSYEEAATICNCAIGTIKSRLNRAR
LRLLVELGEKSSLSAVEREEATPAGDNGIFYA
>Mature_191_residues
APSRYERDSAPRHPGSEIVDLIPALRAFARTFYRDPNDADDLVQETLTKGLSHLHQFEAGTSMKSWLFTIMRNTFYTKIK
VAKREAPGTADCVSARPVVNATQEWSARGLEIHHAIQRLPEQQREVMMLIGVLGMSYEEAATICNCAIGTIKSRLNRARL
RLLVELGEKSSLSAVEREEATPAGDNGIFYA

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=139, Percent_Identity=29.4964028776978, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21435; Mature: 21304

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPSRYERDSAPRHPGSEIVDLIPALRAFARTFYRDPNDADDLVQETLTKGLSHLHQFEA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
GTSMKSWLFTIMRNTFYTKIKVAKREAPGTADCVSARPVVNATQEWSARGLEIHHAIQRL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHCCHHHHHHCCHHHHHHHHHH
PEQQREVMMLIGVLGMSYEEAATICNCAIGTIKSRLNRARLRLLVELGEKSSLSAVEREE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
ATPAGDNGIFYA
CCCCCCCCCCCC
>Mature Secondary Structure 
APSRYERDSAPRHPGSEIVDLIPALRAFARTFYRDPNDADDLVQETLTKGLSHLHQFEA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
GTSMKSWLFTIMRNTFYTKIKVAKREAPGTADCVSARPVVNATQEWSARGLEIHHAIQRL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHCCHHHHHHCCHHHHHHHHHH
PEQQREVMMLIGVLGMSYEEAATICNCAIGTIKSRLNRARLRLLVELGEKSSLSAVEREE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHC
ATPAGDNGIFYA
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]