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The map label for this gene is rirA [H]

Identifier: 110633798

GI number: 110633798

Start: 1538972

End: 1539433

Strand: Reverse

Name: rirA [H]

Synonym: Meso_1445

Alternate gene names: 110633798

Gene position: 1539433-1538972 (Counterclockwise)

Preceding gene: 110633807

Following gene: 110633793

Centisome position: 34.89

GC content: 56.49

Gene sequence:

>462_bases
ATGCGGCTTACCCGGCAAACGAATTATGCAATTCGAATTCTGATGTATTGCGCGGCGAATGAAGGCCGCCTCAGCCGGAT
TCCCGACATTGCTCAAGCTTATTCCCTGTCCGACCTTTTTCTTTTCAAAATCCTTCAACCCCTGGTCGAGGCCGGGTTCG
TGCAGACGGTGCGCGGCCGCAACGGTGGTGTGAAGCTTGGCAAACCGGCCGAGGACATCACTTTGTTCGACGTCATCCGT
GTCACGGAAGAGAGCTTTGCCATGGCGGAGTGCTTCGAGAACGATACGGAGTGTCCGCTCGTCGATGGCTGCGGGCTGAA
TGAGGCGCTGCGTAAGGCGCTAGGCGCATTCTTCGAGGTTCTTGCCTCCTACACGATCCAGGATTTGGTCGACGCGCGCC
CGAACATGCGCGATGTATTGGGCTTGGAAGTGCAGCAAGTTCCATTAGCCACAACCGTCTAG

Upstream 100 bases:

>100_bases
TGGCAATCTGGACCTATAGCGTCATCTTTTTGTGATTATATCTGGAATTGCGCTGAACTATTAGCCATATTGGTTTGCGA
CATACAGCGAAGGGTTTCTC

Downstream 100 bases:

>100_bases
GCAGAGAATATCAGACCATCGCCGTCTGCGGCAAAAGGAAGGGTGTGGGTCCGTCCGGGAGCGCACCCACTTTCAGCTGA
CAATCGAAGACCTCCGATAA

Product: iron-responsive transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 153

Protein sequence:

>153_residues
MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGRNGGVKLGKPAEDITLFDVIR
VTEESFAMAECFENDTECPLVDGCGLNEALRKALGAFFEVLASYTIQDLVDARPNMRDVLGLEVQQVPLATTV

Sequences:

>Translated_153_residues
MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGRNGGVKLGKPAEDITLFDVIR
VTEESFAMAECFENDTECPLVDGCGLNEALRKALGAFFEVLASYTIQDLVDARPNMRDVLGLEVQQVPLATTV
>Mature_153_residues
MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGRNGGVKLGKPAEDITLFDVIR
VTEESFAMAECFENDTECPLVDGCGLNEALRKALGAFFEVLASYTIQDLVDARPNMRDVLGLEVQQVPLATTV

Specific function: Required for growth utilizing PHB cycle intermediates [H]

COG id: COG1959

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH rrf2-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790621, Length=144, Percent_Identity=37.5, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000944
- InterPro:   IPR011991 [H]

Pfam domain/function: PF02082 Rrf2 [H]

EC number: NA

Molecular weight: Translated: 16963; Mature: 16963

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR
CCCCCCCCHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NGGVKLGKPAEDITLFDVIRVTEESFAMAECFENDTECPLVDGCGLNEALRKALGAFFEV
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHH
LASYTIQDLVDARPNMRDVLGLEVQQVPLATTV
HHHHHHHHHHHCCCCHHHHHCCCHHCCCCCCCC
>Mature Secondary Structure
MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR
CCCCCCCCHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NGGVKLGKPAEDITLFDVIRVTEESFAMAECFENDTECPLVDGCGLNEALRKALGAFFEV
CCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHH
LASYTIQDLVDARPNMRDVLGLEVQQVPLATTV
HHHHHHHHHHHCCCCHHHHHCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10735852; 11481430 [H]