Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 110633729

GI number: 110633729

Start: 1470364

End: 1470801

Strand: Reverse

Name: ycfF [C]

Synonym: Meso_1376

Alternate gene names: 110633729

Gene position: 1470801-1470364 (Counterclockwise)

Preceding gene: 110633730

Following gene: 110633728

Centisome position: 33.33

GC content: 60.5

Gene sequence:

>438_bases
ATGACCTATGACAACGACAATCCCTTCGCCAAGATCCTGCGCGGGGAACTGCCGGCGCAAAAGATTTACGAGGATGCCGA
GACGCTCGCCTTCATGGACATCATGCCCCGCAGTCCGGGGCATTGCCTGGTCATCCCCAAGCGTCCCTCGCGCAACATTC
TCGATGCGGATCCAGCGGTGCTCACCGCGCTCATCCAAACCGCCCAGAAGCTTTCCAAGGCGGTTATGACCGCCTTTCAG
GCCGATGGTGTCAGGATTGCGCAGTACAACGAGCCCGCCTCCGGCCAAACCGTCTTTCATTTGCATATACACGTCATCCC
CTGCTTCGCAGGCAGGAGCCTCGGTCCCGAAGGCGGGCCGATGGAAAAGCCGGACATCCTGGCTGAGAACGCACGCAAAA
TCCGCGAGGCGCTGGAAGCGGCTGAGGCGGAAAGCTGA

Upstream 100 bases:

>100_bases
GGATGATGGGCGTCCACGCTAAAAAGTCGGGCTTGACCGGAACGCCGACACCTCCCAAACATCAGCGCGGCCAATCTTCG
CATACGAGAGCGAGTCCAGC

Downstream 100 bases:

>100_bases
TCGTGGATATCCCTGTTTTGGTCATCAATCTCGACCGCTCGAAGGAACGGTGGGAGGGCTTGGCGGCTCGCGCCGCGGCG
ATCGATATTTTCCCCGAACG

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MTYDNDNPFAKILRGELPAQKIYEDAETLAFMDIMPRSPGHCLVIPKRPSRNILDADPAVLTALIQTAQKLSKAVMTAFQ
ADGVRIAQYNEPASGQTVFHLHIHVIPCFAGRSLGPEGGPMEKPDILAENARKIREALEAAEAES

Sequences:

>Translated_145_residues
MTYDNDNPFAKILRGELPAQKIYEDAETLAFMDIMPRSPGHCLVIPKRPSRNILDADPAVLTALIQTAQKLSKAVMTAFQ
ADGVRIAQYNEPASGQTVFHLHIHVIPCFAGRSLGPEGGPMEKPDILAENARKIREALEAAEAES
>Mature_144_residues
TYDNDNPFAKILRGELPAQKIYEDAETLAFMDIMPRSPGHCLVIPKRPSRNILDADPAVLTALIQTAQKLSKAVMTAFQA
DGVRIAQYNEPASGQTVFHLHIHVIPCFAGRSLGPEGGPMEKPDILAENARKIREALEAAEAES

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI14211923, Length=109, Percent_Identity=39.4495412844037, Blast_Score=71, Evalue=4e-13,
Organism=Homo sapiens, GI4885413, Length=113, Percent_Identity=36.283185840708, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17506713, Length=113, Percent_Identity=44.2477876106195, Blast_Score=90, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6320078, Length=143, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574010, Length=112, Percent_Identity=36.6071428571429, Blast_Score=75, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24581222, Length=112, Percent_Identity=36.6071428571429, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 15851; Mature: 15720

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYDNDNPFAKILRGELPAQKIYEDAETLAFMDIMPRSPGHCLVIPKRPSRNILDADPAV
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHH
LTALIQTAQKLSKAVMTAFQADGVRIAQYNEPASGQTVFHLHIHVIPCFAGRSLGPEGGP
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCC
MEKPDILAENARKIREALEAAEAES
CCCCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TYDNDNPFAKILRGELPAQKIYEDAETLAFMDIMPRSPGHCLVIPKRPSRNILDADPAV
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHH
LTALIQTAQKLSKAVMTAFQADGVRIAQYNEPASGQTVFHLHIHVIPCFAGRSLGPEGGP
HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEEEECCCCCCCCCCC
MEKPDILAENARKIREALEAAEAES
CCCCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]