| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is ifcA [H]
Identifier: 110633418
GI number: 110633418
Start: 1167764
End: 1169281
Strand: Reverse
Name: ifcA [H]
Synonym: Meso_1064
Alternate gene names: 110633418
Gene position: 1169281-1167764 (Counterclockwise)
Preceding gene: 110633424
Following gene: 110633417
Centisome position: 26.5
GC content: 61.86
Gene sequence:
>1518_bases ATGACTGAAATTTTTCATGATGTGATTGTGGTTGGAGCAGGCAACGCTGCGATGTGCGCCGCGCTCTCCGCTCGCGAAAA CGGGGCCACGGTCCTGGTGCTCGAACGGGCTCCTGAAGCGGAACGGGGCGGCAACAGCCGCTTCACGGCAGGCGGAATGC GCTTTGCCTATTCCGGGCTGGACGATCTTCTGAAGGTCATGCCGGACCTGACCGAAGAGGAAATCGCGCGCACCGATTTC GGCACCTTCACAGAAGACCAGTTCTTTGACGATATGGGCCGGATCACCGAGTACAGGACCGACCCGGACATGGCCGAGCT TCTTGTTACCAAGAGCCTCGACACGATGGTCTGGATGCGCTCCAAAGGTGTGCGTTTCCAGCCGATCTATGGCAGGCAGG CCTTCAAGGTGGACGGCAAGTTCAAGTTCTGGGGCGGCATGACGGTGGAATCCTGGGGCGGCGGCCCCGGCCTTGTGGAG GCGCTCCATAGCCGCGCGGCCAAGGAGGGCATCAAGGTGCTCCATAATGCCCGCGCGATGTCGCTTATCCATGACGACGA CGGCGTTCACGGAGTGGTCGCGCGCATCAATGGGCGCACTACGAAGCTTCATGGCGGCGCAGTGGTGCTCGCCTGCGGCG GTTTCCAGGCCAATTCCGAGTGGCGCAGCCGCTATCTCGGCCAGAATTGGGAACTGGCCAAGGTTCGCGGGACACGCTTC AACACCGGCGACGGCATTCGGATGGCGCTGGACGCCGGCGCCATGCCGTGGGGCCATTGGTCGGGCGGTCACGCCGTGGG ATGGGACCGCAACGCGCCGCCCTTCGGCGACCTCGATGTGGGAGACGGGTTCCAGAAGCACAGCTACCCGTTCGGCATCA TGGTCAATGCCAATGGCGAGCGCTTCGTGGACGAAGGCGCGGATTTCCGCAACTACACCTATGCCAAATATGGCGGCATC ATCCTCAATCAGCCCCAACAATTCGCCTGGCAGATCTTCGACCAGAAAGTGGTGCATCTTCTTCGCGACGAGTACCGCAT CAGGCAGGTCACAAAGGCCGAGGCCAATTCGATCGAGGAGCTTGCCGGGAAACTGGAAGGCGACGATGCCCAGCGTTTCA TCCGCGAGGTGGAGGAATACAATGCCGCGATCAAGACCGAAACGCCCTTCAATCCGAACGTGAAGGACGGACGGTGCACT CAGGGACTCAAGATCAACAAGTCCAACTGGGCCAACACGCTCGATCAGGGGCCGTTCTTGGCGTTCCAGGTCACATGCGG CCTGACTTTCACCTTCGGCGGGCTCAAGGTTGATACCGATGCGCAGGTGATCGACTCAGAAAATGAGCTGATGCCGAACC TCTTCGCGGCCGGCGAGCTTGTGGGCGGGCTTTTCTACTTCAATTATCCGGGCGGAACGGGCCTCATGGCCGGCGCCGTC TTCGGCCGAACGGCGGGGCGCAGCGCGGCGCGGGCAGCGCTTGCGCGCGGCGAGAAGGTCCGCTCCACTGCGCTTTGA
Upstream 100 bases:
>100_bases CCCTTCCTCCACCATCCAAAGGAAAAAGCAGAAAAACACTTGCGCATACATTTGTATACGATAGATTGCGCATGGCAAGA CGAAAACACAGCAGGCGGCA
Downstream 100 bases:
>100_bases CGAACCCCGAGAAGACGAAGGTGCACAATGTCTGACCGCCGCCTGACCGGCAAAATCCATCCGTCCGGGATCGGAGCAAT CGAGCTGCCGAAAGTCCCCG
Product: tricarballylate dehydrogenase
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 505; Mature: 504
Protein sequence:
>505_residues MTEIFHDVIVVGAGNAAMCAALSARENGATVLVLERAPEAERGGNSRFTAGGMRFAYSGLDDLLKVMPDLTEEEIARTDF GTFTEDQFFDDMGRITEYRTDPDMAELLVTKSLDTMVWMRSKGVRFQPIYGRQAFKVDGKFKFWGGMTVESWGGGPGLVE ALHSRAAKEGIKVLHNARAMSLIHDDDGVHGVVARINGRTTKLHGGAVVLACGGFQANSEWRSRYLGQNWELAKVRGTRF NTGDGIRMALDAGAMPWGHWSGGHAVGWDRNAPPFGDLDVGDGFQKHSYPFGIMVNANGERFVDEGADFRNYTYAKYGGI ILNQPQQFAWQIFDQKVVHLLRDEYRIRQVTKAEANSIEELAGKLEGDDAQRFIREVEEYNAAIKTETPFNPNVKDGRCT QGLKINKSNWANTLDQGPFLAFQVTCGLTFTFGGLKVDTDAQVIDSENELMPNLFAAGELVGGLFYFNYPGGTGLMAGAV FGRTAGRSAARAALARGEKVRSTAL
Sequences:
>Translated_505_residues MTEIFHDVIVVGAGNAAMCAALSARENGATVLVLERAPEAERGGNSRFTAGGMRFAYSGLDDLLKVMPDLTEEEIARTDF GTFTEDQFFDDMGRITEYRTDPDMAELLVTKSLDTMVWMRSKGVRFQPIYGRQAFKVDGKFKFWGGMTVESWGGGPGLVE ALHSRAAKEGIKVLHNARAMSLIHDDDGVHGVVARINGRTTKLHGGAVVLACGGFQANSEWRSRYLGQNWELAKVRGTRF NTGDGIRMALDAGAMPWGHWSGGHAVGWDRNAPPFGDLDVGDGFQKHSYPFGIMVNANGERFVDEGADFRNYTYAKYGGI ILNQPQQFAWQIFDQKVVHLLRDEYRIRQVTKAEANSIEELAGKLEGDDAQRFIREVEEYNAAIKTETPFNPNVKDGRCT QGLKINKSNWANTLDQGPFLAFQVTCGLTFTFGGLKVDTDAQVIDSENELMPNLFAAGELVGGLFYFNYPGGTGLMAGAV FGRTAGRSAARAALARGEKVRSTAL >Mature_504_residues TEIFHDVIVVGAGNAAMCAALSARENGATVLVLERAPEAERGGNSRFTAGGMRFAYSGLDDLLKVMPDLTEEEIARTDFG TFTEDQFFDDMGRITEYRTDPDMAELLVTKSLDTMVWMRSKGVRFQPIYGRQAFKVDGKFKFWGGMTVESWGGGPGLVEA LHSRAAKEGIKVLHNARAMSLIHDDDGVHGVVARINGRTTKLHGGAVVLACGGFQANSEWRSRYLGQNWELAKVRGTRFN TGDGIRMALDAGAMPWGHWSGGHAVGWDRNAPPFGDLDVGDGFQKHSYPFGIMVNANGERFVDEGADFRNYTYAKYGGII LNQPQQFAWQIFDQKVVHLLRDEYRIRQVTKAEANSIEELAGKLEGDDAQRFIREVEEYNAAIKTETPFNPNVKDGRCTQ GLKINKSNWANTLDQGPFLAFQVTCGLTFTFGGLKVDTDAQVIDSENELMPNLFAAGELVGGLFYFNYPGGTGLMAGAVF GRTAGRSAARAALARGEKVRSTAL
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 55377; Mature: 55246
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEIFHDVIVVGAGNAAMCAALSARENGATVLVLERAPEAERGGNSRFTAGGMRFAYSGL CCCCEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEECCCCEEECCCH DDLLKVMPDLTEEEIARTDFGTFTEDQFFDDMGRITEYRTDPDMAELLVTKSLDTMVWMR HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHH SKGVRFQPIYGRQAFKVDGKFKFWGGMTVESWGGGPGLVEALHSRAAKEGIKVLHNARAM CCCCEEEEECCCEEEEECCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHE SLIHDDDGVHGVVARINGRTTKLHGGAVVLACGGFQANSEWRSRYLGQNWELAKVRGTRF EEEECCCCCEEEEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCEE NTGDGIRMALDAGAMPWGHWSGGHAVGWDRNAPPFGDLDVGDGFQKHSYPFGIMVNANGE CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCC RFVDEGADFRNYTYAKYGGIILNQPQQFAWQIFDQKVVHLLRDEYRIRQVTKAEANSIEE CHHHCCCCCCCEEEHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAGKLEGDDAQRFIREVEEYNAAIKTETPFNPNVKDGRCTQGLKINKSNWANTLDQGPFL HHHHCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEE AFQVTCGLTFTFGGLKVDTDAQVIDSENELMPNLFAAGELVGGLFYFNYPGGTGLMAGAV EEEEEECEEEEECCEEECCCCCEECCCCHHCCHHHHHHHHHCEEEEEECCCCCCHHHHHH FGRTAGRSAARAALARGEKVRSTAL HCCCCCHHHHHHHHHCCCHHHHCCC >Mature Secondary Structure TEIFHDVIVVGAGNAAMCAALSARENGATVLVLERAPEAERGGNSRFTAGGMRFAYSGL CCCEEEEEEEECCCHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCEECCCCEEECCCH DDLLKVMPDLTEEEIARTDFGTFTEDQFFDDMGRITEYRTDPDMAELLVTKSLDTMVWMR HHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHH SKGVRFQPIYGRQAFKVDGKFKFWGGMTVESWGGGPGLVEALHSRAAKEGIKVLHNARAM CCCCEEEEECCCEEEEECCEEEEECCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHE SLIHDDDGVHGVVARINGRTTKLHGGAVVLACGGFQANSEWRSRYLGQNWELAKVRGTRF EEEECCCCCEEEEEEECCCEEEEECCEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCEE NTGDGIRMALDAGAMPWGHWSGGHAVGWDRNAPPFGDLDVGDGFQKHSYPFGIMVNANGE CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEEEECCCC RFVDEGADFRNYTYAKYGGIILNQPQQFAWQIFDQKVVHLLRDEYRIRQVTKAEANSIEE CHHHCCCCCCCEEEHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAGKLEGDDAQRFIREVEEYNAAIKTETPFNPNVKDGRCTQGLKINKSNWANTLDQGPFL HHHHCCCCHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEE AFQVTCGLTFTFGGLKVDTDAQVIDSENELMPNLFAAGELVGGLFYFNYPGGTGLMAGAV EEEEEECEEEEECCEEECCCCCEECCCCHHCCHHHHHHHHHCEEEEEECCCCCCHHHHHH FGRTAGRSAARAALARGEKVRSTAL HCCCCCHHHHHHHHHCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]