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The map label for this gene is ydhC [H]

Identifier: 110633415

GI number: 110633415

Start: 1164479

End: 1165162

Strand: Reverse

Name: ydhC [H]

Synonym: Meso_1061

Alternate gene names: 110633415

Gene position: 1165162-1164479 (Counterclockwise)

Preceding gene: 110633416

Following gene: 110633414

Centisome position: 26.41

GC content: 64.18

Gene sequence:

>684_bases
ATGGCGAAGTCTGGCGGCAAGGAAGCTACGATGAATGCATTGTCGTCGCGCGGAGGACCTCGTGGCGAATTCGTGTACCG
GGCTCTCCTCGAAGGCATCCGCGCCGGGCGCATCCTGCCTGGTGACCGCATTCGCGAGGAGGACGTGGCGCAGTCCCTCG
GCGTCAGCAGGACGCCGGTTCGGGAGGCGCTACAGCACCTTCAAGCCCGCCGGCTCGTGGAGCTGGCGCCCGGCCGGGGC
ATTGTTGTCGTGGAGCTGAACACCCAGCAGGTGATGGAGCTCTATGCCATGCGCGAAGTGCTGGAGGGTGCGGCGGCCCG
CTTCGCCGCCCAGCATGCCCTGCCGGCCGAGATCGCCATCATGCATGAGCTGGCGGATGAGTTCGATGCGTCGAAGGGCG
ACCCGGCAAAGCTCGCCCGCATCAACAACAACCTTCACCGGGTCATCTATGAGGCGGCGCGTAACCGCTACATGCACGAG
GCGCTGAACAGTCTAGAGGATGCGCTCTCGCTGCTTCAAAACACCACCTTCAGCTTGCCGGAACGTCACTCCTCCGCCTC
GAAGGAACATCGCGCCATCATCGCGGCGATCGAGGCCCGCGACGCCGAAAAGGCGGAAACCGAAAGCCGTCAACACATTC
GCGAGGCTCAGCGCGCACGCCTTCGCATGCTGATGGACAGATAA

Upstream 100 bases:

>100_bases
CGCCCGGCCATCCAGTTGACATGTGGTCCGCTTCCCTCCACATCGCATACAACGGTCCACGAAGAACGTTCTGTCCTTGG
AATCGGAGTGCAGGTGGCGG

Downstream 100 bases:

>100_bases
GCGGCCCTGATTTCCATCTGTAGAAAACGAGCCTGGCATCAGAAGGTGCCGTGGCATGAGCATTTGCCGTCAGCCATTCG
TGCCCCATCAGTGACAAGCT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MAKSGGKEATMNALSSRGGPRGEFVYRALLEGIRAGRILPGDRIREEDVAQSLGVSRTPVREALQHLQARRLVELAPGRG
IVVVELNTQQVMELYAMREVLEGAAARFAAQHALPAEIAIMHELADEFDASKGDPAKLARINNNLHRVIYEAARNRYMHE
ALNSLEDALSLLQNTTFSLPERHSSASKEHRAIIAAIEARDAEKAETESRQHIREAQRARLRMLMDR

Sequences:

>Translated_227_residues
MAKSGGKEATMNALSSRGGPRGEFVYRALLEGIRAGRILPGDRIREEDVAQSLGVSRTPVREALQHLQARRLVELAPGRG
IVVVELNTQQVMELYAMREVLEGAAARFAAQHALPAEIAIMHELADEFDASKGDPAKLARINNNLHRVIYEAARNRYMHE
ALNSLEDALSLLQNTTFSLPERHSSASKEHRAIIAAIEARDAEKAETESRQHIREAQRARLRMLMDR
>Mature_226_residues
AKSGGKEATMNALSSRGGPRGEFVYRALLEGIRAGRILPGDRIREEDVAQSLGVSRTPVREALQHLQARRLVELAPGRGI
VVVELNTQQVMELYAMREVLEGAAARFAAQHALPAEIAIMHELADEFDASKGDPAKLARINNNLHRVIYEAARNRYMHEA
LNSLEDALSLLQNTTFSLPERHSSASKEHRAIIAAIEARDAEKAETESRQHIREAQRARLRMLMDR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=208, Percent_Identity=25.4807692307692, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789353, Length=225, Percent_Identity=24.8888888888889, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25290; Mature: 25159

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSGGKEATMNALSSRGGPRGEFVYRALLEGIRAGRILPGDRIREEDVAQSLGVSRTPV
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHH
REALQHLQARRLVELAPGRGIVVVELNTQQVMELYAMREVLEGAAARFAAQHALPAEIAI
HHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MHELADEFDASKGDPAKLARINNNLHRVIYEAARNRYMHEALNSLEDALSLLQNTTFSLP
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ERHSSASKEHRAIIAAIEARDAEKAETESRQHIREAQRARLRMLMDR
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AKSGGKEATMNALSSRGGPRGEFVYRALLEGIRAGRILPGDRIREEDVAQSLGVSRTPV
CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCHH
REALQHLQARRLVELAPGRGIVVVELNTQQVMELYAMREVLEGAAARFAAQHALPAEIAI
HHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
MHELADEFDASKGDPAKLARINNNLHRVIYEAARNRYMHEALNSLEDALSLLQNTTFSLP
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ERHSSASKEHRAIIAAIEARDAEKAETESRQHIREAQRARLRMLMDR
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]