| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is 110633349
Identifier: 110633349
GI number: 110633349
Start: 1092597
End: 1093511
Strand: Reverse
Name: 110633349
Synonym: Meso_0995
Alternate gene names: NA
Gene position: 1093511-1092597 (Counterclockwise)
Preceding gene: 110633350
Following gene: 110633346
Centisome position: 24.78
GC content: 62.73
Gene sequence:
>915_bases ATGGCCAATATCATCGCGACGGGCTTCAATGCCGGTTCTATCGACGGGGAGCTCTTCAGCCTCGAGGCAGAGCTGCGGCG GCTGGCCGAGATCGGCGTTGACACGGTCGAGCTGGGGCTGACCAGCATCGACCTCATCAGCGGCGGCCGCATCATCAGGG AACGGGCGGAGAGGCTGAAGGCGCTCACGGCGCAATTTCCCTTCCGCTATACCGTTCACGGCCTGGTTTCCTCGAACTTC ATGGATCCTGCGACCCTGCGCTACCAGATGGATGCCGCCAAGGCGCTGATCGAGATCTGTGACCAGATCGATGCCCGGAT AATCGTCCAGCATGGCGGGCATCTGCGCGCGGACCAGCTCTTCGACCGCGCGGCGGCGGATGAGCGCGAACGCGAGGCGC TGTTCGAGCTTGCCGAGTTCGCCCGTCCTTATGATGTGCGCATTGCGTTCGAGAACATATTCACCACCGAGCCGGGGCAA TACCGCCAGACGCCGGCCGAGGTTGCGGCCACGGTGAAGGCGGTCAACCACCCCAATCTCGTGGCGCTGATCGATTTCAG CCACGCCTACATCGAGTCCACCTATCGCGGGCTGGATTTCCGCGAGCAGCTGCGGGCCATGGCGCCGGTTGCCGGGCACC TGCACGTGCACGATTCTTTCGGCCGCCCGATCGGCTTTTACAAGCCGTACCATCTCCAGGAAGCCACCGCGCTGGGACTG GGCGACCTGCACCTGCCGCTTGGCTGGGGAGATATGGACTGGGAAGACATCTTCAGCGAGCTGGAGTTCCTGCCGGGCAC TGTGATGATGATGGAGATCAATCATCGCTATCGCAGCGAGCAACCCGCTAGTCTCGAACGCGCCCAGCAGCTGATGGCGT TGAACGCCCGACGCATTTCAATCGCAGCGGAATGA
Upstream 100 bases:
>100_bases CAGCCCGACCTTGCGCTCTCCCTACGGGCTTCGCTTCAGAAGTCATCCAACCCCGCAATGGCTGGATAAGCCAGCCTCCC TAATCCATCGGAGACAGACA
Downstream 100 bases:
>100_bases CAGAGTGCTAGTGCCACCTTGCAAGCGAGGGTGACGAGCCTTGCAAACCTGCCGCCTGGCAGGCTCTGGCGGCAGGACAC GAGGCGGAGCTTCGGATTCA
Product: xylose isomerase-like TIM barrel
Products: NA
Alternate protein names: Xylose Isomerase Domain-Containing Protein; Xylose Isomerase Domain-Containing Protein TIM Barrel; Xylose Isomerase-Like TIM Barrel; Myo-Inositol Catabolism Protein; Xylose Isomerase-Like Protein
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MANIIATGFNAGSIDGELFSLEAELRRLAEIGVDTVELGLTSIDLISGGRIIRERAERLKALTAQFPFRYTVHGLVSSNF MDPATLRYQMDAAKALIEICDQIDARIIVQHGGHLRADQLFDRAAADEREREALFELAEFARPYDVRIAFENIFTTEPGQ YRQTPAEVAATVKAVNHPNLVALIDFSHAYIESTYRGLDFREQLRAMAPVAGHLHVHDSFGRPIGFYKPYHLQEATALGL GDLHLPLGWGDMDWEDIFSELEFLPGTVMMMEINHRYRSEQPASLERAQQLMALNARRISIAAE
Sequences:
>Translated_304_residues MANIIATGFNAGSIDGELFSLEAELRRLAEIGVDTVELGLTSIDLISGGRIIRERAERLKALTAQFPFRYTVHGLVSSNF MDPATLRYQMDAAKALIEICDQIDARIIVQHGGHLRADQLFDRAAADEREREALFELAEFARPYDVRIAFENIFTTEPGQ YRQTPAEVAATVKAVNHPNLVALIDFSHAYIESTYRGLDFREQLRAMAPVAGHLHVHDSFGRPIGFYKPYHLQEATALGL GDLHLPLGWGDMDWEDIFSELEFLPGTVMMMEINHRYRSEQPASLERAQQLMALNARRISIAAE >Mature_303_residues ANIIATGFNAGSIDGELFSLEAELRRLAEIGVDTVELGLTSIDLISGGRIIRERAERLKALTAQFPFRYTVHGLVSSNFM DPATLRYQMDAAKALIEICDQIDARIIVQHGGHLRADQLFDRAAADEREREALFELAEFARPYDVRIAFENIFTTEPGQY RQTPAEVAATVKAVNHPNLVALIDFSHAYIESTYRGLDFREQLRAMAPVAGHLHVHDSFGRPIGFYKPYHLQEATALGLG DLHLPLGWGDMDWEDIFSELEFLPGTVMMMEINHRYRSEQPASLERAQQLMALNARRISIAAE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34156; Mature: 34025
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANIIATGFNAGSIDGELFSLEAELRRLAEIGVDTVELGLTSIDLISGGRIIRERAERLK CCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCHHHHHHHHHHH ALTAQFPFRYTVHGLVSSNFMDPATLRYQMDAAKALIEICDQIDARIIVQHGGHLRADQL HHHHCCCCCEEEHHHHHCCCCCCHHHEEHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH FDRAAADEREREALFELAEFARPYDVRIAFENIFTTEPGQYRQTPAEVAATVKAVNHPNL HHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCE VALIDFSHAYIESTYRGLDFREQLRAMAPVAGHLHVHDSFGRPIGFYKPYHLQEATALGL EEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCC GDLHLPLGWGDMDWEDIFSELEFLPGTVMMMEINHRYRSEQPASLERAQQLMALNARRIS CCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECHHHCCCCCHHHHHHHHHHHHCCEEEE IAAE EECC >Mature Secondary Structure ANIIATGFNAGSIDGELFSLEAELRRLAEIGVDTVELGLTSIDLISGGRIIRERAERLK CCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCHHHHHHHHHHH ALTAQFPFRYTVHGLVSSNFMDPATLRYQMDAAKALIEICDQIDARIIVQHGGHLRADQL HHHHCCCCCEEEHHHHHCCCCCCHHHEEHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHH FDRAAADEREREALFELAEFARPYDVRIAFENIFTTEPGQYRQTPAEVAATVKAVNHPNL HHHHHCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCE VALIDFSHAYIESTYRGLDFREQLRAMAPVAGHLHVHDSFGRPIGFYKPYHLQEATALGL EEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCC GDLHLPLGWGDMDWEDIFSELEFLPGTVMMMEINHRYRSEQPASLERAQQLMALNARRIS CCEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECHHHCCCCCHHHHHHHHHHHHCCEEEE IAAE EECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA