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The map label for this gene is radA [H]

Identifier: 110633339

GI number: 110633339

Start: 1080388

End: 1081776

Strand: Reverse

Name: radA [H]

Synonym: Meso_0985

Alternate gene names: 110633339

Gene position: 1081776-1080388 (Counterclockwise)

Preceding gene: 110633340

Following gene: 110633338

Centisome position: 24.52

GC content: 66.38

Gene sequence:

>1389_bases
ATGGCCAAATCTCGCTTTCAGTTCGTCTGCCAGAATTGCGGAACCGTCCATGCGCGCTGGGCCGGGAAATGCGACGGCTG
CGGCGAGTGGAATACGCTTGTCGAGGAAGGCACCGCGAGCGGTATAGGCACCGGACCGCAGGCGCTCAGGAAGGCACGCC
CCGGGCGGCCCGTCGCGCTTACCACGCTTGCCGGCGATATCGAGGATGCGCCGCGCATCATCACCGGTATCGGCGAACTG
GATCGGGCGACCGGAGGGGGCTTCGTGCGCGGCTCTGCCCTTCTGGTCGGCGGCGATCCGGGCATCGGCAAATCCACGCT
TCTCACGCAGGCGGCCGCGGCACTGGCCTCCAGAGGCCACCGCATCGTCTACGTTTCCGGCGAAGAGGCGGTCGCGCAGA
TCAGGTTGCGGGCGCAGCGGCTCGGCGTGGCGAACACCGCGGTGGAACTGGCTGCGGAAACCAATGTGGAAAACATCCTT
ACCACCATAGAGGACGGCAAGCGCCCAGACCTCGTGATCCTCGATTCCATCCAGACGCTCTGGACGGACATGGTGGAATC
CGCGCCCGGCACCGTAACGCAGGTTCGCGCCGCCGCGCAGGCGATGATTCGCTACGCAAAATCCACGGGTGCGGCCATCG
TGCTCGTCGGCCATGTGACAAAGGAAGGCCAGATCGCCGGCCCGCGCGTGGTCGAGCACATGGTGGACGGTGTCCTCTAT
TTCGAGGGTGAAGGCGGGCACCATTACCGCATCCTGCGCACCGTGAAGAACCGCTTCGGCCCCACCGACGAGATCGGCGT
CTTCGAAATGGGGGATCGGGGCTTGCGCGAGGTGCCGAACCCTTCGGAACTTTTCCTCGGAGAACGCAGCGCCGCCGCGC
CGGGAGCTGCCGTTTTTGCCGGAATCGAAGGGACGCGGCCCGTGCTTGTGGAAATCCAGGCGCTCGTCGCCGCCTCCCCG
CTCGGCACGCCGCGGCGCGCTGTCGTCGGGTGGGACGGCGCCCGGCTTTCCATGGTGCTCGCCGTGCTAGAGGCCCATTG
CGGCGTGCGCTTCTCCACCCATGACGTGTATCTGAATGTGGCGGGCGGATACCGCATATCGGAGCCCGCGGCGGACCTGG
CGGTGGCGGCCGCGCTCGTCTCCTCCGTCACCGGGCTTGCCCTGCCCTCGGATTGCGTCTATTTCGGCGAAATCAGTCTC
TCGGGTGCGGTCCGGCCCGTTGCGCATGCAGCGAGCCGGCTCAAAGAGGCCGAAAAGCTGGGCTTCACGCAAGCCGTCAT
GCCGCCGGCCAATGAAGAGCTGGCGGGCGGGATTGCAGCCAACGCTTTCAAACCCGAGGGATTGGCCGATCTCGTAGCCC
GTATAGCGGGGTCGCGGGTACGGGAGTAA

Upstream 100 bases:

>100_bases
TATGTCGGAGGGGTCGTGTGACGGCAATCCTCATATCCTGCTCCCCGCACGCTCTCCTCTGGGCTAGGACCAGGGCCAGC
CGCCGGATGGTCAGCAAATA

Downstream 100 bases:

>100_bases
AGAATAGCCTTGCGCCGCGTCAGGAGCAGTGAAAAAGATCCTGCCGTGAAGAAAAACTGGGGTGCTGATGCCAATCACGC
TGCTTGACGGCATTCTCGTG

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 462; Mature: 461

Protein sequence:

>462_residues
MAKSRFQFVCQNCGTVHARWAGKCDGCGEWNTLVEEGTASGIGTGPQALRKARPGRPVALTTLAGDIEDAPRIITGIGEL
DRATGGGFVRGSALLVGGDPGIGKSTLLTQAAAALASRGHRIVYVSGEEAVAQIRLRAQRLGVANTAVELAAETNVENIL
TTIEDGKRPDLVILDSIQTLWTDMVESAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVVEHMVDGVLY
FEGEGGHHYRILRTVKNRFGPTDEIGVFEMGDRGLREVPNPSELFLGERSAAAPGAAVFAGIEGTRPVLVEIQALVAASP
LGTPRRAVVGWDGARLSMVLAVLEAHCGVRFSTHDVYLNVAGGYRISEPAADLAVAAALVSSVTGLALPSDCVYFGEISL
SGAVRPVAHAASRLKEAEKLGFTQAVMPPANEELAGGIAANAFKPEGLADLVARIAGSRVRE

Sequences:

>Translated_462_residues
MAKSRFQFVCQNCGTVHARWAGKCDGCGEWNTLVEEGTASGIGTGPQALRKARPGRPVALTTLAGDIEDAPRIITGIGEL
DRATGGGFVRGSALLVGGDPGIGKSTLLTQAAAALASRGHRIVYVSGEEAVAQIRLRAQRLGVANTAVELAAETNVENIL
TTIEDGKRPDLVILDSIQTLWTDMVESAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVVEHMVDGVLY
FEGEGGHHYRILRTVKNRFGPTDEIGVFEMGDRGLREVPNPSELFLGERSAAAPGAAVFAGIEGTRPVLVEIQALVAASP
LGTPRRAVVGWDGARLSMVLAVLEAHCGVRFSTHDVYLNVAGGYRISEPAADLAVAAALVSSVTGLALPSDCVYFGEISL
SGAVRPVAHAASRLKEAEKLGFTQAVMPPANEELAGGIAANAFKPEGLADLVARIAGSRVRE
>Mature_461_residues
AKSRFQFVCQNCGTVHARWAGKCDGCGEWNTLVEEGTASGIGTGPQALRKARPGRPVALTTLAGDIEDAPRIITGIGELD
RATGGGFVRGSALLVGGDPGIGKSTLLTQAAAALASRGHRIVYVSGEEAVAQIRLRAQRLGVANTAVELAAETNVENILT
TIEDGKRPDLVILDSIQTLWTDMVESAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVVEHMVDGVLYF
EGEGGHHYRILRTVKNRFGPTDEIGVFEMGDRGLREVPNPSELFLGERSAAAPGAAVFAGIEGTRPVLVEIQALVAASPL
GTPRRAVVGWDGARLSMVLAVLEAHCGVRFSTHDVYLNVAGGYRISEPAADLAVAAALVSSVTGLALPSDCVYFGEISLS
GAVRPVAHAASRLKEAEKLGFTQAVMPPANEELAGGIAANAFKPEGLADLVARIAGSRVRE

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=439, Percent_Identity=44.6469248291572, Blast_Score=372, Evalue=1e-104,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR020588
- InterPro:   IPR004504
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC [H]

EC number: NA

Molecular weight: Translated: 48205; Mature: 48073

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKSRFQFVCQNCGTVHARWAGKCDGCGEWNTLVEEGTASGIGTGPQALRKARPGRPVAL
CCCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEE
TTLAGDIEDAPRIITGIGELDRATGGGFVRGSALLVGGDPGIGKSTLLTQAAAALASRGH
EEECCCCCCCCHHHHCCCHHHCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCC
RIVYVSGEEAVAQIRLRAQRLGVANTAVELAAETNVENILTTIEDGKRPDLVILDSIQTL
EEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCHHHH
WTDMVESAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVVEHMVDGVLY
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCEEE
FEGEGGHHYRILRTVKNRFGPTDEIGVFEMGDRGLREVPNPSELFLGERSAAAPGAAVFA
EECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCHHHEECCCCCCCCCCEEEE
GIEGTRPVLVEIQALVAASPLGTPRRAVVGWDGARLSMVLAVLEAHCGVRFSTHDVYLNV
CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECEEEEEE
AGGYRISEPAADLAVAAALVSSVTGLALPSDCVYFGEISLSGAVRPVAHAASRLKEAEKL
CCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHC
GFTQAVMPPANEELAGGIAANAFKPEGLADLVARIAGSRVRE
CCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKSRFQFVCQNCGTVHARWAGKCDGCGEWNTLVEEGTASGIGTGPQALRKARPGRPVAL
CCHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEE
TTLAGDIEDAPRIITGIGELDRATGGGFVRGSALLVGGDPGIGKSTLLTQAAAALASRGH
EEECCCCCCCCHHHHCCCHHHCCCCCCEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCC
RIVYVSGEEAVAQIRLRAQRLGVANTAVELAAETNVENILTTIEDGKRPDLVILDSIQTL
EEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEECCHHHH
WTDMVESAPGTVTQVRAAAQAMIRYAKSTGAAIVLVGHVTKEGQIAGPRVVEHMVDGVLY
HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHCCEEE
FEGEGGHHYRILRTVKNRFGPTDEIGVFEMGDRGLREVPNPSELFLGERSAAAPGAAVFA
EECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCHHHEECCCCCCCCCCEEEE
GIEGTRPVLVEIQALVAASPLGTPRRAVVGWDGARLSMVLAVLEAHCGVRFSTHDVYLNV
CCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECEEEEEE
AGGYRISEPAADLAVAAALVSSVTGLALPSDCVYFGEISLSGAVRPVAHAASRLKEAEKL
CCCCEECCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHC
GFTQAVMPPANEELAGGIAANAFKPEGLADLVARIAGSRVRE
CCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA