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The map label for this gene is ycjD [C]

Identifier: 110633320

GI number: 110633320

Start: 1063029

End: 1063442

Strand: Direct

Name: ycjD [C]

Synonym: Meso_0966

Alternate gene names: 110633320

Gene position: 1063029-1063442 (Clockwise)

Preceding gene: 110633319

Following gene: 110633321

Centisome position: 24.09

GC content: 60.63

Gene sequence:

>414_bases
ATGCCGCATACGCCGGTCCCTGGACGCAATCGCCGCAACGCGAAGGCGATGCGCAACGCGATGACGGACGCCGAGCTGAA
GCTCTGGAATTCTCTACGTGCGCACCGGCTCGCAGGTCTTGGGTTCCGGCGCCAAATGCCAATCGCCGGCTATATTGCTG
ATTTCGCATGTCCAGCCGAGGAATTGATTGTGGAAGTTGATGGTTCGCAGCACGGCGAGCCGAATACCGCGCGGCGAGAT
GAACTACGAACCGCGCGCCTGAAAGCAGATGGCTGGACCATCCTTCGCTTCTGGAATGACGAAATCCTGCGCGATATTGA
CGGCGTCTGCCGCCACATCGTGGCCGCAGCGGGATTGATCGCAGGAGATGCGGCCAGGGCCGGAGTGCTGCATGAGAAGG
AGCTGACGCAATGA

Upstream 100 bases:

>100_bases
TATCCGATCTCCCCCCTTGTGGGGGAGATGGCCGGCAGGCCAGAGGGGGGCAACACAGTGCACCGGCCTTCACGATTTTT
CCTGCGCGGGAGGGCTGGTG

Downstream 100 bases:

>100_bases
TCGATCACATCGGCATCAAGGTTGCGAATTTCGATCGCGCGAAGGCATTTTACGATCAGGCGCTCGCGCCATTGGGTGCA
AGCCTCATGATGATGGTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MPHTPVPGRNRRNAKAMRNAMTDAELKLWNSLRAHRLAGLGFRRQMPIAGYIADFACPAEELIVEVDGSQHGEPNTARRD
ELRTARLKADGWTILRFWNDEILRDIDGVCRHIVAAAGLIAGDAARAGVLHEKELTQ

Sequences:

>Translated_137_residues
MPHTPVPGRNRRNAKAMRNAMTDAELKLWNSLRAHRLAGLGFRRQMPIAGYIADFACPAEELIVEVDGSQHGEPNTARRD
ELRTARLKADGWTILRFWNDEILRDIDGVCRHIVAAAGLIAGDAARAGVLHEKELTQ
>Mature_136_residues
PHTPVPGRNRRNAKAMRNAMTDAELKLWNSLRAHRLAGLGFRRQMPIAGYIADFACPAEELIVEVDGSQHGEPNTARRDE
LRTARLKADGWTILRFWNDEILRDIDGVCRHIVAAAGLIAGDAARAGVLHEKELTQ

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_1162 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=90, Percent_Identity=46.6666666666667, Blast_Score=90, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 15261; Mature: 15129

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHTPVPGRNRRNAKAMRNAMTDAELKLWNSLRAHRLAGLGFRRQMPIAGYIADFACPAE
CCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHH
ELIVEVDGSQHGEPNTARRDELRTARLKADGWTILRFWNDEILRDIDGVCRHIVAAAGLI
HEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
AGDAARAGVLHEKELTQ
HCCHHHHCCCCHHHCCC
>Mature Secondary Structure 
PHTPVPGRNRRNAKAMRNAMTDAELKLWNSLRAHRLAGLGFRRQMPIAGYIADFACPAE
CCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHH
ELIVEVDGSQHGEPNTARRDELRTARLKADGWTILRFWNDEILRDIDGVCRHIVAAAGLI
HEEEECCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
AGDAARAGVLHEKELTQ
HCCHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]