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The map label for this gene is recO

Identifier: 110633306

GI number: 110633306

Start: 1048886

End: 1049632

Strand: Direct

Name: recO

Synonym: Meso_0952

Alternate gene names: 110633306

Gene position: 1048886-1049632 (Clockwise)

Preceding gene: 110633305

Following gene: 110633307

Centisome position: 23.77

GC content: 66.27

Gene sequence:

>747_bases
ATGGAATGGCATGACGAAGGCATTGTGCTCGGCACCCGCAGGCACGGCGAGTCCAGTGTCATCCTGGAGGCGATAACCGC
CGCCCACGGCCGGCATCTGGGCCTCGTTCGCGGCGGACGCTCGAAACGCATGCAACCGGTGCTGCAACCGGGCAACAGGG
TGGATCTCACCTGGCGCGCGCGGCTCGACGAGCATCTGGGCCTGTTCCAGGTGGAACCGCTGGAGCTCAATGCGGCGCGG
CTTTTGAACTCTGCCGTTGCGATCTACGGCATCCAGCTGCTCGCCGCTCACCTGCGCCTGCTGCCCGAACGTGACCCGCA
TCCTGGATTGTTCGAGGCGCTGGGCGTGATCGCGGCCCATCTGGACGAGCCAGAGACGGCGGGCGTTCTGGTGGCGCGCT
TCGAGCTCGCCGTGCTGGATGCGCTGGGTTTCGGGCTCGATCTTGCCCGCTGCGCGGTGACGGGCAGCCGCGAAGACCTC
GCTTATGTCTCACCGAAAACGGGAAGGGCGGTAACGCGGGAAGCGGGAGCACCCTGGGCTGACAAGCTGCTTCCGTTGCC
GACCTTCCTGACCGCCGGAAACGAGGCCCTCTATGATCGGGCGATCCTCTCGCAGGCTTTCGCGCTGACGGGCTTTTTCT
TCGCACGCCATGTCTACGAGCCGCGGGGACTTACCGAGCCGGAGGCGAGGGCAGGCTTTCTCGCCGCAGTGATGCGCAAT
CTCCCGGAGGGAGAGAGCGCGCCGTGA

Upstream 100 bases:

>100_bases
TGTTCCTCTTCGTGAAGGTCCGCGAGAATTGGGGCGACGATCCAGAGCGCTACCGCGAGATGGGGCTTGAATTCCCCGGA
TAGCGGCGCGACAAGCGGCC

Downstream 100 bases:

>100_bases
GTCTGCGCTCGCCAGGCGCAGGCGCTTTACGAGTAAGCATCAAAAATATTGAAACTACAGTGCTCATCTATTCATTTGAA
TCAATGATTGCTTTGGCTAA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MEWHDEGIVLGTRRHGESSVILEAITAAHGRHLGLVRGGRSKRMQPVLQPGNRVDLTWRARLDEHLGLFQVEPLELNAAR
LLNSAVAIYGIQLLAAHLRLLPERDPHPGLFEALGVIAAHLDEPETAGVLVARFELAVLDALGFGLDLARCAVTGSREDL
AYVSPKTGRAVTREAGAPWADKLLPLPTFLTAGNEALYDRAILSQAFALTGFFFARHVYEPRGLTEPEARAGFLAAVMRN
LPEGESAP

Sequences:

>Translated_248_residues
MEWHDEGIVLGTRRHGESSVILEAITAAHGRHLGLVRGGRSKRMQPVLQPGNRVDLTWRARLDEHLGLFQVEPLELNAAR
LLNSAVAIYGIQLLAAHLRLLPERDPHPGLFEALGVIAAHLDEPETAGVLVARFELAVLDALGFGLDLARCAVTGSREDL
AYVSPKTGRAVTREAGAPWADKLLPLPTFLTAGNEALYDRAILSQAFALTGFFFARHVYEPRGLTEPEARAGFLAAVMRN
LPEGESAP
>Mature_248_residues
MEWHDEGIVLGTRRHGESSVILEAITAAHGRHLGLVRGGRSKRMQPVLQPGNRVDLTWRARLDEHLGLFQVEPLELNAAR
LLNSAVAIYGIQLLAAHLRLLPERDPHPGLFEALGVIAAHLDEPETAGVLVARFELAVLDALGFGLDLARCAVTGSREDL
AYVSPKTGRAVTREAGAPWADKLLPLPTFLTAGNEALYDRAILSQAFALTGFFFARHVYEPRGLTEPEARAGFLAAVMRN
LPEGESAP

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_MESSB (Q11JS6)

Other databases:

- EMBL:   CP000390
- RefSeq:   YP_673514.1
- ProteinModelPortal:   Q11JS6
- STRING:   Q11JS6
- GeneID:   4180329
- GenomeReviews:   CP000390_GR
- KEGG:   mes:Meso_0952
- NMPDR:   fig|266779.1.peg.3922
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   MSP266779:MESO_0952-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26941; Mature: 26941

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWHDEGIVLGTRRHGESSVILEAITAAHGRHLGLVRGGRSKRMQPVLQPGNRVDLTWRA
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCEEEEEEHC
RLDEHLGLFQVEPLELNAARLLNSAVAIYGIQLLAAHLRLLPERDPHPGLFEALGVIAAH
CHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LDEPETAGVLVARFELAVLDALGFGLDLARCAVTGSREDLAYVSPKTGRAVTREAGAPWA
CCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCHH
DKLLPLPTFLTAGNEALYDRAILSQAFALTGFFFARHVYEPRGLTEPEARAGFLAAVMRN
HHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LPEGESAP
CCCCCCCC
>Mature Secondary Structure
MEWHDEGIVLGTRRHGESSVILEAITAAHGRHLGLVRGGRSKRMQPVLQPGNRVDLTWRA
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCEEEEEEHC
RLDEHLGLFQVEPLELNAARLLNSAVAIYGIQLLAAHLRLLPERDPHPGLFEALGVIAAH
CHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LDEPETAGVLVARFELAVLDALGFGLDLARCAVTGSREDLAYVSPKTGRAVTREAGAPWA
CCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCHH
DKLLPLPTFLTAGNEALYDRAILSQAFALTGFFFARHVYEPRGLTEPEARAGFLAAVMRN
HHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
LPEGESAP
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA