| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
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The map label for this gene is coxL [H]
Identifier: 110633261
GI number: 110633261
Start: 1003467
End: 1005779
Strand: Direct
Name: coxL [H]
Synonym: Meso_0907
Alternate gene names: 110633261
Gene position: 1003467-1005779 (Clockwise)
Preceding gene: 110633258
Following gene: 110633262
Centisome position: 22.74
GC content: 62.0
Gene sequence:
>2313_bases ATGACGGTTCTCACACCGAAATTCGGCATGGGCGCTTCCGTGCTGCGCAAGGAAGATGAGAGCTTTATAACGGGCAGGGG CCGCTACACCGATGACATCACTCCGCCCGGAACCCTTTGTGGATATGTCCTTCGTTCTTCTATGGCCAAAGCGCGCTTCA CGGTTTCGTCCACCGAGGCGGCCCGTGCAGCTCCCGGCGTTCACCTGGTGCTCACCGGAGCCGACACGGCGCATCTGGGC GACCTCATATCCGGCGGCATGCCTAAACAGCCCGATGGCAGCAAAGCCCCGACCCGCGATATCCCGATCCTCTGCCGCGA TCGCGTCCAATATGTGGGCGACGCCGTTGCATTCATCGTCGCCGATACCCGTGAGCAGGCGCAGGATGCGGCGGAACTGA TAGAGGTCGATTATGAGGACGAGGAGCCGGCGGTCGACACGGCTGCCGCGCTTCAAGACGGCGCCCCGCTCGTTTGGCCC GAACTGGGCACAAACCAGGCATTTCTCTATCATGTCGGCGATAAGAGAAAGACCGATGCGGCCTTCGCCAGCGCCGACCG GGTTGTAAAGATCGCCTTCATCAACAATCGCCTTGTCGCCAATTATATGGAGACACGCTCTGCCATCGCTGAATGGAAGC CGGATGAGAATCGCTTTGTGCTGACCACCGGTTCGCAAGGCGTGCATTCCCTGCAGGAAATTCTCACCCGCGTCTTCGGC ATCCCCACATCGCAATTGCGCGTGGTCACGCCCGATGTCGGCGGCGGTTTCGGAACCAAGGCCTTCGCCTACCGCGAATA TGCCCTTGTCATGGAGGCGGCAAAGAGGCTCGGCCGGCCGGTCAAGTGGACCAGCGATCGCAACGAGCATTTCCTGACCG ACAGCCAGGGCCGCGACAATGCGGTGACCGCCGAAATGGCGCTCGACCAGACAGGCCGTTTTCTTGCCATGCGCGTGGAG CTGCTCGCCAATATGGGAGCGTATATCCATCAGTTCGGGCCTTATATTCCGGTCGGCGGCGCCTCGATGACCACCGGTGT CTATGACATTCAGGCGATCGACGTGACCGTGAGAGGCGTCTACACCAACACGGCTCCGGTAGATGCCTATCGCGGGGCAG GGCGGCCCGAGGCGGCCTTCCTCATCGAAAAGCTGGTGGAGGTATGCGCGCGCCAGATGAAGCTGCCGCGGGAAGAGATC CGCCGGCGCAATTTCATCGGGGTGGAGCAGTTCCCCTACCGCACGCCGACGGGGCGGCGCTACGATCGCTGTGAGTTCGA TGGGCACATGACGCTTGCGATGGAGCGCGCGGGATGGGCCACATTCGAGGAGAGATTCGCGGAGGCGAAGAAGCGCGGGC GCATCCGTGGCATCGGCATGTCGACCTATATCGAGGCATGTGCCTTCGCCGGCTCGGAGCCCGCTTACCTCACCCTCAAC GGCGACGGCTCGGTGACGCTTGCGATCGGCACGCAATCCAACGGGCAAGGCCATGCGACCGCCTATGCCCAGTTTGTGGC CGAAAAGCTGAACCTAGAAATTGCGAAGATCCACGTCCATCAGGGCGATACGGATGTGCTGAAGACGGGCGGCGGAACGG GCGGTTCGCGCTCGATCCCACTGGGTGGGGTCTCAGCGGCACGGGCGGGTGAAGATCTTGCCGAAAAAATCAAGAGGATC GCGGCGGAGGAAATGGAAGCTTCGCCCGCCGATATCGAGCTGGTCGATGGCATCGCCAGAATCGTCGGCACCGACCGGAT GATGGACTTCGCCTCGATCGCCAGGGCCGCGAAAAGCCCGGAAGACCTGAAGGGCTTCGGCAATTTCGAACAGCCCGAGC CAACCTATCCGAATGGAACGCATATCTGTGAGGTCGAGATAGACCCGGCGACGGGAAGGACGGACGTCGTTGCCTATACG ATCGTGGATGATTTCGGAGCGACGGCAAATCCGATTCTCCTGGCCGGTCAGGTTCACGGGGGCGTAGCCCAGGGTGTCGG GCAGGCTCTGTCCGAGGAGGTGATCTATTCGGAGGACGGGCAGCTCGTGACAGCCACCTTTATGGATTATTCGATGCCGC GTGCCGATCTGTTGCCCTTCATCCAGTTCGAGACCCGCAATGTGCCGTCCAGCACGAATGCGTTGGGGATGAAGGGTGCG GGCGAGGCAGGCACGGTCGGCTCCACGCCGGCCGCCCTGAACGCCGTTGTCGACGCGCTTTACCGTGCCTACGGCATCTC GCATATCGAGATGCCGGCGACGCCGGCGCGCATCTGGCAGGCGATCGCCAGCGCGAGTGCTGAGCAAGCATAA
Upstream 100 bases:
>100_bases CCAAGAATTTCGAAGCTGGCTCTTTACACGATGCAGCCCGTCGACAAAACTGCTCAGGCCACTACGTTCAGACTTTCCAT TCACTCGCAAGGAATTCGTT
Downstream 100 bases:
>100_bases TTTCACTCAGGCCCGGCTGATCGTGTTGGCCGGGCGTTTTGATTCCTCCTTTTTCTGATCCGGTAAAACCATGACCGTCG CTGCGAGCGATTTTGGCACT
Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein
Products: NA
Alternate protein names: CO dehydrogenase subunit L; CO-DH L [H]
Number of amino acids: Translated: 770; Mature: 769
Protein sequence:
>770_residues MTVLTPKFGMGASVLRKEDESFITGRGRYTDDITPPGTLCGYVLRSSMAKARFTVSSTEAARAAPGVHLVLTGADTAHLG DLISGGMPKQPDGSKAPTRDIPILCRDRVQYVGDAVAFIVADTREQAQDAAELIEVDYEDEEPAVDTAAALQDGAPLVWP ELGTNQAFLYHVGDKRKTDAAFASADRVVKIAFINNRLVANYMETRSAIAEWKPDENRFVLTTGSQGVHSLQEILTRVFG IPTSQLRVVTPDVGGGFGTKAFAYREYALVMEAAKRLGRPVKWTSDRNEHFLTDSQGRDNAVTAEMALDQTGRFLAMRVE LLANMGAYIHQFGPYIPVGGASMTTGVYDIQAIDVTVRGVYTNTAPVDAYRGAGRPEAAFLIEKLVEVCARQMKLPREEI RRRNFIGVEQFPYRTPTGRRYDRCEFDGHMTLAMERAGWATFEERFAEAKKRGRIRGIGMSTYIEACAFAGSEPAYLTLN GDGSVTLAIGTQSNGQGHATAYAQFVAEKLNLEIAKIHVHQGDTDVLKTGGGTGGSRSIPLGGVSAARAGEDLAEKIKRI AAEEMEASPADIELVDGIARIVGTDRMMDFASIARAAKSPEDLKGFGNFEQPEPTYPNGTHICEVEIDPATGRTDVVAYT IVDDFGATANPILLAGQVHGGVAQGVGQALSEEVIYSEDGQLVTATFMDYSMPRADLLPFIQFETRNVPSSTNALGMKGA GEAGTVGSTPAALNAVVDALYRAYGISHIEMPATPARIWQAIASASAEQA
Sequences:
>Translated_770_residues MTVLTPKFGMGASVLRKEDESFITGRGRYTDDITPPGTLCGYVLRSSMAKARFTVSSTEAARAAPGVHLVLTGADTAHLG DLISGGMPKQPDGSKAPTRDIPILCRDRVQYVGDAVAFIVADTREQAQDAAELIEVDYEDEEPAVDTAAALQDGAPLVWP ELGTNQAFLYHVGDKRKTDAAFASADRVVKIAFINNRLVANYMETRSAIAEWKPDENRFVLTTGSQGVHSLQEILTRVFG IPTSQLRVVTPDVGGGFGTKAFAYREYALVMEAAKRLGRPVKWTSDRNEHFLTDSQGRDNAVTAEMALDQTGRFLAMRVE LLANMGAYIHQFGPYIPVGGASMTTGVYDIQAIDVTVRGVYTNTAPVDAYRGAGRPEAAFLIEKLVEVCARQMKLPREEI RRRNFIGVEQFPYRTPTGRRYDRCEFDGHMTLAMERAGWATFEERFAEAKKRGRIRGIGMSTYIEACAFAGSEPAYLTLN GDGSVTLAIGTQSNGQGHATAYAQFVAEKLNLEIAKIHVHQGDTDVLKTGGGTGGSRSIPLGGVSAARAGEDLAEKIKRI AAEEMEASPADIELVDGIARIVGTDRMMDFASIARAAKSPEDLKGFGNFEQPEPTYPNGTHICEVEIDPATGRTDVVAYT IVDDFGATANPILLAGQVHGGVAQGVGQALSEEVIYSEDGQLVTATFMDYSMPRADLLPFIQFETRNVPSSTNALGMKGA GEAGTVGSTPAALNAVVDALYRAYGISHIEMPATPARIWQAIASASAEQA >Mature_769_residues TVLTPKFGMGASVLRKEDESFITGRGRYTDDITPPGTLCGYVLRSSMAKARFTVSSTEAARAAPGVHLVLTGADTAHLGD LISGGMPKQPDGSKAPTRDIPILCRDRVQYVGDAVAFIVADTREQAQDAAELIEVDYEDEEPAVDTAAALQDGAPLVWPE LGTNQAFLYHVGDKRKTDAAFASADRVVKIAFINNRLVANYMETRSAIAEWKPDENRFVLTTGSQGVHSLQEILTRVFGI PTSQLRVVTPDVGGGFGTKAFAYREYALVMEAAKRLGRPVKWTSDRNEHFLTDSQGRDNAVTAEMALDQTGRFLAMRVEL LANMGAYIHQFGPYIPVGGASMTTGVYDIQAIDVTVRGVYTNTAPVDAYRGAGRPEAAFLIEKLVEVCARQMKLPREEIR RRNFIGVEQFPYRTPTGRRYDRCEFDGHMTLAMERAGWATFEERFAEAKKRGRIRGIGMSTYIEACAFAGSEPAYLTLNG DGSVTLAIGTQSNGQGHATAYAQFVAEKLNLEIAKIHVHQGDTDVLKTGGGTGGSRSIPLGGVSAARAGEDLAEKIKRIA AEEMEASPADIELVDGIARIVGTDRMMDFASIARAAKSPEDLKGFGNFEQPEPTYPNGTHICEVEIDPATGRTDVVAYTI VDDFGATANPILLAGQVHGGVAQGVGQALSEEVIYSEDGQLVTATFMDYSMPRADLLPFIQFETRNVPSSTNALGMKGAG EAGTVGSTPAALNAVVDALYRAYGISHIEMPATPARIWQAIASASAEQA
Specific function: Catalyzes the oxidation of carbon monoxide to carbon dioxide [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI91823271, Length=765, Percent_Identity=26.0130718954248, Blast_Score=159, Evalue=7e-39, Organism=Homo sapiens, GI71773480, Length=778, Percent_Identity=23.9074550128535, Blast_Score=151, Evalue=3e-36, Organism=Escherichia coli, GI1789230, Length=768, Percent_Identity=28.125, Blast_Score=224, Evalue=2e-59, Organism=Escherichia coli, GI1789246, Length=808, Percent_Identity=25.4950495049505, Blast_Score=206, Evalue=5e-54, Organism=Escherichia coli, GI1786478, Length=741, Percent_Identity=24.9662618083671, Blast_Score=117, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17540638, Length=705, Percent_Identity=26.0992907801418, Blast_Score=176, Evalue=5e-44, Organism=Caenorhabditis elegans, GI17539860, Length=749, Percent_Identity=24.1655540720961, Blast_Score=129, Evalue=7e-30, Organism=Caenorhabditis elegans, GI32566215, Length=559, Percent_Identity=25.4025044722719, Blast_Score=127, Evalue=2e-29, Organism=Drosophila melanogaster, GI17737937, Length=768, Percent_Identity=24.8697916666667, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI24647199, Length=651, Percent_Identity=22.273425499232, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24647201, Length=718, Percent_Identity=22.1448467966574, Blast_Score=99, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012780 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.2.99.2 [H]
Molecular weight: Translated: 82835; Mature: 82704
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVLTPKFGMGASVLRKEDESFITGRGRYTDDITPPGTLCGYVLRSSMAKARFTVSSTEA CCEECCCCCCCHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCHH ARAAPGVHLVLTGADTAHLGDLISGGMPKQPDGSKAPTRDIPILCRDRVQYVGDAVAFIV HHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEE ADTREQAQDAAELIEVDYEDEEPAVDTAAALQDGAPLVWPELGTNQAFLYHVGDKRKTDA ECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCCCHH AFASADRVVKIAFINNRLVANYMETRSAIAEWKPDENRFVLTTGSQGVHSLQEILTRVFG HHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC IPTSQLRVVTPDVGGGFGTKAFAYREYALVMEAAKRLGRPVKWTSDRNEHFLTDSQGRDN CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCC AVTAEMALDQTGRFLAMRVELLANMGAYIHQFGPYIPVGGASMTTGVYDIQAIDVTVRGV CEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEEEE YTNTAPVDAYRGAGRPEAAFLIEKLVEVCARQMKLPREEIRRRNFIGVEQFPYRTPTGRR EECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHCCCCCCCCCC YDRCEFDGHMTLAMERAGWATFEERFAEAKKRGRIRGIGMSTYIEACAFAGSEPAYLTLN CCCEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCEEEEEC GDGSVTLAIGTQSNGQGHATAYAQFVAEKLNLEIAKIHVHQGDTDVLKTGGGTGGSRSIP CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCHHEECCCCCCCCCCCC LGGVSAARAGEDLAEKIKRIAAEEMEASPADIELVDGIARIVGTDRMMDFASIARAAKSP CCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCH EDLKGFGNFEQPEPTYPNGTHICEVEIDPATGRTDVVAYTIVDDFGATANPILLAGQVHG HHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEECCCC GVAQGVGQALSEEVIYSEDGQLVTATFMDYSMPRADLLPFIQFETRNVPSSTNALGMKGA HHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCC GEAGTVGSTPAALNAVVDALYRAYGISHIEMPATPARIWQAIASASAEQA CCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCC >Mature Secondary Structure TVLTPKFGMGASVLRKEDESFITGRGRYTDDITPPGTLCGYVLRSSMAKARFTVSSTEA CEECCCCCCCHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCHH ARAAPGVHLVLTGADTAHLGDLISGGMPKQPDGSKAPTRDIPILCRDRVQYVGDAVAFIV HHCCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEE ADTREQAQDAAELIEVDYEDEEPAVDTAAALQDGAPLVWPELGTNQAFLYHVGDKRKTDA ECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCCCHH AFASADRVVKIAFINNRLVANYMETRSAIAEWKPDENRFVLTTGSQGVHSLQEILTRVFG HHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHC IPTSQLRVVTPDVGGGFGTKAFAYREYALVMEAAKRLGRPVKWTSDRNEHFLTDSQGRDN CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEECCCCCCCC AVTAEMALDQTGRFLAMRVELLANMGAYIHQFGPYIPVGGASMTTGVYDIQAIDVTVRGV CEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEEEE YTNTAPVDAYRGAGRPEAAFLIEKLVEVCARQMKLPREEIRRRNFIGVEQFPYRTPTGRR EECCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHCCCCCCCCCC YDRCEFDGHMTLAMERAGWATFEERFAEAKKRGRIRGIGMSTYIEACAFAGSEPAYLTLN CCCEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCEEEEEC GDGSVTLAIGTQSNGQGHATAYAQFVAEKLNLEIAKIHVHQGDTDVLKTGGGTGGSRSIP CCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEECCCCHHEECCCCCCCCCCCC LGGVSAARAGEDLAEKIKRIAAEEMEASPADIELVDGIARIVGTDRMMDFASIARAAKSP CCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCH EDLKGFGNFEQPEPTYPNGTHICEVEIDPATGRTDVVAYTIVDDFGATANPILLAGQVHG HHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCCCEEEEECCCC GVAQGVGQALSEEVIYSEDGQLVTATFMDYSMPRADLLPFIQFETRNVPSSTNALGMKGA HHHHHHHHHHHHHHEECCCCCEEEEEECCCCCCHHHCCCEEEEECCCCCCCCCCCCCCCC GEAGTVGSTPAALNAVVDALYRAYGISHIEMPATPARIWQAIASASAEQA CCCCCCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7721710; 2818128; 12515558; 10430865; 12475995 [H]