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The map label for this gene is yngJ [H]

Identifier: 110632946

GI number: 110632946

Start: 658769

End: 659911

Strand: Reverse

Name: yngJ [H]

Synonym: Meso_0589

Alternate gene names: 110632946

Gene position: 659911-658769 (Counterclockwise)

Preceding gene: 110632947

Following gene: 110632941

Centisome position: 14.96

GC content: 65.27

Gene sequence:

>1143_bases
ATGGATTTCGATCTGAGCGAGGAGCAGGTCGCCGTCGCCGAAACGGCGCGGTCCTTCGCTGACGAGGAGCTTGCCCCTTT
TGCGATCCAGTGGGATCGCGACAAGCATTTTCCGCTGGAGACGCTGCGCAAGGCCGGCGCGCTTGGGATGGGCGGCATCT
ATGTCGCGGAGGCGAGCGGCGGCACCGGGCTCGGCCGGGTGGAATCCGTTATCACCATCGAGGCGCTGGCGACCGGCTGC
CCCTCAATCGCGGCCTATATCTCCATCCATAACATGTGCGCCTGGATGATCGACTGCTTCGGCAATGACGAGCAGCGCCG
GCGCTGGTTGCCCCAAATGATCGCGATGGAGTGCCTCGGCAGCTATTGCCTTACCGAGCCAGGCTCGGGCTCGGATGCCG
CAGCCTTGACGACACGGGCGATCCGCGACGGCGACGATTATGTCGTGACCGGTCAGAAGCAGTTCATCTCTGGAGCTGGG
GCCGCGGGCGTCTACATCGTCATGGTGCGCACAGGCGGCGACGGCCCCAAAGGGATCTCGGCGCTGGTAATCCCGGCCGA
TACGCCGGGCCTATCCTTCGGCGCCAACGAGCACAAGATGGGGTGGAACGCCCAGCCGACGCGGGCCGTCGTCCTGGACG
GCGCGCGCGTTCCCGTCGCCAACCGCCTCGGCGCGGAAGGGGATGGCTTCAAGATCGCCATGGCAGGCCTTGATGGCGGC
CGCCTGAATATCGCGGCGGCTTCGCTCGGCGGCGCACAGGCGGCATTCGAGAAGGCGGTGGCCTATATGCGCGAGCGCCG
TGCCTTCGGGCAGGCACTCATAAATTTCCAGGCCCTGCAGTTTCATCTGGCCGACATGGCGACGGAGCTGGAGGCCTGCC
GCACCTTTCTGTGGCGTGCGGCCGAGGCGCTGGAGAGGAAGGCGCCGGACGCAACGCGGCTCTGCGCCATGGCCAAGCGC
CTGGTGACGGACCGCTGCTTCGAGGTGGCCAACAAGGCTTTGCAGCTGCATGGCGGCTATGGCTATCTCGCCGAATACGG
CATGGAGAAGATCGTGCGCGATCTGCGCGTGCATCAAATTCTTGAGGGCACGAACGAGATCATGCGCATGATCGTGGCCC
GCTCGATCTGCGCAGAGAAGTGA

Upstream 100 bases:

>100_bases
GTGAATTGCTGCACGGCTATCGTATGGAATTGCCGATGTTGCCGTGCGTAGTTACCATGGGCGATAGCCCGAAGGGCGGA
CCCGGCCTAGGGACGACGAT

Downstream 100 bases:

>100_bases
CGGCAAGCGGGCACGGCGGAAGCTGTGCCCGAAGAGGCCTCAGATAGGCGCATGGCGAGAGGTTTGGCGGAGAGGTGGTT
CAGAGATCGTCAATGGCCGT

Product: acyl-CoA dehydrogenase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 380

Protein sequence:

>380_residues
MDFDLSEEQVAVAETARSFADEELAPFAIQWDRDKHFPLETLRKAGALGMGGIYVAEASGGTGLGRVESVITIEALATGC
PSIAAYISIHNMCAWMIDCFGNDEQRRRWLPQMIAMECLGSYCLTEPGSGSDAAALTTRAIRDGDDYVVTGQKQFISGAG
AAGVYIVMVRTGGDGPKGISALVIPADTPGLSFGANEHKMGWNAQPTRAVVLDGARVPVANRLGAEGDGFKIAMAGLDGG
RLNIAAASLGGAQAAFEKAVAYMRERRAFGQALINFQALQFHLADMATELEACRTFLWRAAEALERKAPDATRLCAMAKR
LVTDRCFEVANKALQLHGGYGYLAEYGMEKIVRDLRVHQILEGTNEIMRMIVARSICAEK

Sequences:

>Translated_380_residues
MDFDLSEEQVAVAETARSFADEELAPFAIQWDRDKHFPLETLRKAGALGMGGIYVAEASGGTGLGRVESVITIEALATGC
PSIAAYISIHNMCAWMIDCFGNDEQRRRWLPQMIAMECLGSYCLTEPGSGSDAAALTTRAIRDGDDYVVTGQKQFISGAG
AAGVYIVMVRTGGDGPKGISALVIPADTPGLSFGANEHKMGWNAQPTRAVVLDGARVPVANRLGAEGDGFKIAMAGLDGG
RLNIAAASLGGAQAAFEKAVAYMRERRAFGQALINFQALQFHLADMATELEACRTFLWRAAEALERKAPDATRLCAMAKR
LVTDRCFEVANKALQLHGGYGYLAEYGMEKIVRDLRVHQILEGTNEIMRMIVARSICAEK
>Mature_380_residues
MDFDLSEEQVAVAETARSFADEELAPFAIQWDRDKHFPLETLRKAGALGMGGIYVAEASGGTGLGRVESVITIEALATGC
PSIAAYISIHNMCAWMIDCFGNDEQRRRWLPQMIAMECLGSYCLTEPGSGSDAAALTTRAIRDGDDYVVTGQKQFISGAG
AAGVYIVMVRTGGDGPKGISALVIPADTPGLSFGANEHKMGWNAQPTRAVVLDGARVPVANRLGAEGDGFKIAMAGLDGG
RLNIAAASLGGAQAAFEKAVAYMRERRAFGQALINFQALQFHLADMATELEACRTFLWRAAEALERKAPDATRLCAMAKR
LVTDRCFEVANKALQLHGGYGYLAEYGMEKIVRDLRVHQILEGTNEIMRMIVARSICAEK

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI7656849, Length=375, Percent_Identity=54.9333333333333, Blast_Score=438, Evalue=1e-123,
Organism=Homo sapiens, GI187960098, Length=378, Percent_Identity=36.5079365079365, Blast_Score=264, Evalue=8e-71,
Organism=Homo sapiens, GI4557231, Length=378, Percent_Identity=36.5079365079365, Blast_Score=264, Evalue=9e-71,
Organism=Homo sapiens, GI4557233, Length=372, Percent_Identity=38.7096774193548, Blast_Score=253, Evalue=2e-67,
Organism=Homo sapiens, GI4501859, Length=377, Percent_Identity=36.604774535809, Blast_Score=243, Evalue=2e-64,
Organism=Homo sapiens, GI4501857, Length=380, Percent_Identity=34.2105263157895, Blast_Score=213, Evalue=2e-55,
Organism=Homo sapiens, GI226958412, Length=381, Percent_Identity=32.0209973753281, Blast_Score=211, Evalue=1e-54,
Organism=Homo sapiens, GI226958414, Length=344, Percent_Identity=31.1046511627907, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI76496475, Length=342, Percent_Identity=33.0409356725146, Blast_Score=188, Evalue=9e-48,
Organism=Homo sapiens, GI4557235, Length=342, Percent_Identity=33.0409356725146, Blast_Score=187, Evalue=1e-47,
Organism=Homo sapiens, GI21361497, Length=358, Percent_Identity=32.122905027933, Blast_Score=184, Evalue=9e-47,
Organism=Homo sapiens, GI4503943, Length=389, Percent_Identity=29.0488431876607, Blast_Score=129, Evalue=6e-30,
Organism=Homo sapiens, GI7669494, Length=362, Percent_Identity=29.0055248618785, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI38505218, Length=286, Percent_Identity=25.5244755244755, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI211971008, Length=346, Percent_Identity=25.7225433526012, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI48976061, Length=346, Percent_Identity=25.7225433526012, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI87081958, Length=384, Percent_Identity=29.9479166666667, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1786223, Length=385, Percent_Identity=26.7532467532467, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI87082384, Length=264, Percent_Identity=28.030303030303, Blast_Score=85, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17533517, Length=370, Percent_Identity=48.9189189189189, Blast_Score=387, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI17534899, Length=381, Percent_Identity=35.9580052493438, Blast_Score=265, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI17569725, Length=378, Percent_Identity=35.4497354497354, Blast_Score=263, Evalue=1e-70,
Organism=Caenorhabditis elegans, GI17570075, Length=382, Percent_Identity=35.6020942408377, Blast_Score=249, Evalue=1e-66,
Organism=Caenorhabditis elegans, GI17508101, Length=377, Percent_Identity=34.2175066312997, Blast_Score=228, Evalue=5e-60,
Organism=Caenorhabditis elegans, GI17538396, Length=383, Percent_Identity=34.2036553524804, Blast_Score=220, Evalue=8e-58,
Organism=Caenorhabditis elegans, GI17506239, Length=379, Percent_Identity=34.3007915567282, Blast_Score=220, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI71985184, Length=353, Percent_Identity=30.5949008498584, Blast_Score=184, Evalue=8e-47,
Organism=Caenorhabditis elegans, GI71990804, Length=279, Percent_Identity=34.7670250896057, Blast_Score=171, Evalue=6e-43,
Organism=Caenorhabditis elegans, GI32563615, Length=230, Percent_Identity=37.3913043478261, Blast_Score=160, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17505929, Length=381, Percent_Identity=30.9711286089239, Blast_Score=159, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI17551932, Length=374, Percent_Identity=30.2139037433155, Blast_Score=157, Evalue=1e-38,
Organism=Caenorhabditis elegans, GI71982178, Length=274, Percent_Identity=31.3868613138686, Blast_Score=155, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI71985192, Length=287, Percent_Identity=29.616724738676, Blast_Score=132, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI17534353, Length=378, Percent_Identity=26.1904761904762, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17562446, Length=331, Percent_Identity=27.190332326284, Blast_Score=110, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI17531909, Length=245, Percent_Identity=26.1224489795918, Blast_Score=81, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI86563383, Length=273, Percent_Identity=27.8388278388278, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI86563381, Length=273, Percent_Identity=27.8388278388278, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24660351, Length=378, Percent_Identity=35.4497354497354, Blast_Score=251, Evalue=5e-67,
Organism=Drosophila melanogaster, GI21356377, Length=377, Percent_Identity=37.6657824933687, Blast_Score=249, Evalue=2e-66,
Organism=Drosophila melanogaster, GI24646207, Length=376, Percent_Identity=39.3617021276596, Blast_Score=246, Evalue=3e-65,
Organism=Drosophila melanogaster, GI24666513, Length=374, Percent_Identity=34.7593582887701, Blast_Score=234, Evalue=6e-62,
Organism=Drosophila melanogaster, GI21355753, Length=386, Percent_Identity=33.6787564766839, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI281363737, Length=339, Percent_Identity=33.3333333333333, Blast_Score=187, Evalue=7e-48,
Organism=Drosophila melanogaster, GI19920834, Length=383, Percent_Identity=28.4595300261097, Blast_Score=129, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 40865; Mature: 40865

Theoretical pI: Translated: 5.49; Mature: 5.49

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDLSEEQVAVAETARSFADEELAPFAIQWDRDKHFPLETLRKAGALGMGGIYVAEASG
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEECCC
GTGLGRVESVITIEALATGCPSIAAYISIHNMCAWMIDCFGNDEQRRRWLPQMIAMECLG
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SYCLTEPGSGSDAAALTTRAIRDGDDYVVTGQKQFISGAGAAGVYIVMVRTGGDGPKGIS
HHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCEEEEEEEECCCCCCCCE
ALVIPADTPGLSFGANEHKMGWNAQPTRAVVLDGARVPVANRLGAEGDGFKIAMAGLDGG
EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCC
RLNIAAASLGGAQAAFEKAVAYMRERRAFGQALINFQALQFHLADMATELEACRTFLWRA
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEALERKAPDATRLCAMAKRLVTDRCFEVANKALQLHGGYGYLAEYGMEKIVRDLRVHQI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH
LEGTNEIMRMIVARSICAEK
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFDLSEEQVAVAETARSFADEELAPFAIQWDRDKHFPLETLRKAGALGMGGIYVAEASG
CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCCEEEEECCC
GTGLGRVESVITIEALATGCPSIAAYISIHNMCAWMIDCFGNDEQRRRWLPQMIAMECLG
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
SYCLTEPGSGSDAAALTTRAIRDGDDYVVTGQKQFISGAGAAGVYIVMVRTGGDGPKGIS
HHHCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCEEEEEEEECCCCCCCCE
ALVIPADTPGLSFGANEHKMGWNAQPTRAVVLDGARVPVANRLGAEGDGFKIAMAGLDGG
EEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCEEEEEEECCCC
RLNIAAASLGGAQAAFEKAVAYMRERRAFGQALINFQALQFHLADMATELEACRTFLWRA
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEALERKAPDATRLCAMAKRLVTDRCFEVANKALQLHGGYGYLAEYGMEKIVRDLRVHQI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH
LEGTNEIMRMIVARSICAEK
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]