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The map label for this gene is yagR [H]

Identifier: 110632938

GI number: 110632938

Start: 640581

End: 642695

Strand: Reverse

Name: yagR [H]

Synonym: Meso_0580

Alternate gene names: 110632938

Gene position: 642695-640581 (Counterclockwise)

Preceding gene: 110632939

Following gene: 110632936

Centisome position: 14.57

GC content: 63.64

Gene sequence:

>2115_bases
ATGAGTGCTATCGGCGTCGCAACAAACAGGGTCGAAGGGCGAGCAAAGGTCACCGGCGCTGCCCGCTACACGGGCGATAT
CGTGGCCGAAGGCCTGGTCCACGGCTTCATCGTCGGAAGCACCATCGCCAGCGGGCGCGTGCTCGATATCGACTTTTCGA
GGGCGCGCGAGGCCGGCGGAGTTCTCCGGGTGTTCACCCATCTGGACATGCCGAGGCTGCGGAGCCTCGCGAGTCCGCCC
GCAGGCGACACGCATCTCCCGATGCAAGACGACAGGGTTCTCTACGAGGGTCAGCCGGTCGCCGTGGTGGTGTCAGAAAC
CTTCGAGCAGGCGCGTGAAGCCGCGCGGCTGGTTGAGGTTACCTATGATCGGAGTGACTTCCTAACCGACTTCGCGGGCA
ATCTCTCGCGAGCGGAGCACAGGCCGCTCTACGGCATGCCCCCGGACACGCAGCACGGCGATCCCGACACGTTCATGCAA
CGTGGTGACGTCGTCGTCGGAGCCACCTATGCCACCGCGGACCGGCATCATGTGCCGATGGAGCCATCCGTCACCATGGC
AATGTGGCATGGAGAGCGGCTGATCCTGCGTGATGCCGTACAAGGAGTGATGTTGACCCGCAACACCGTCGCGCAGGCGC
TCGGGATTGAACCTTCACAGGTTGAGGTCCAATGCGAGTTCGTCGGCGGTGCATTTGGCTGCACGGGTTTTATTTGGTCG
CATCAGCTCCTCGCGGCAGCTCTTTCTCGCGAAATTGGGCGACCACTTCGTCTCACCCTCACGCGTGCACAAACCTTCAC
GGCGCATGGCTATCAGCCAGCCTCCGTACAGACCGTTCGGCTGGCCGCCACTCAAGATGGGGCACTTCTCGCCACACGCC
ACGACAGCCTTCTGGCGGGCTCGGTCGCAGGCGGGCACGTTGAGCCCGTCGGTTGGGGCACGCGCTCGGTCTATGCGTGT
GACAATGCCGCGGTCACCCATCGCGTCGTCCGGCTCAACAAGGGCAATCCGACGCCGATGCGATCCCCGATCGAGGGTAT
CGGCATGGTCGCTACCGAAATCGCAATGGACGAACTCGCATTCGAGCTGGGAATGAACCCGCTGGAACTCAGGCTGCGGA
ACTACACTGATACGGATCTTGCGCATAATAGACCCTTCTCACTGAAGCGGCTGCGCGAATGCTACTCGGAAGGGGCGCGC
CTGTTCGGCTGGCCGCAAACCCTCCCACCGCCGGCCACGCTCCAGGACGGGCGGGAGCTCGTCGGCTACGGCATGGCCAC
CGCGATCTTCCAGACATTCCGGAGCGAAGCCTCAGCCCGTGTCACAGCACTTCAATCCGGTCGCATTCGGGTGGAGACCG
GAACACAGGAGATCGGCGGCGGTACCTATACGGTGCTCGCGCAAGTGGCCGCTGAGGTTCTCGACGTGCCTGTGGCCAAC
GTGGACGTGGTGATCGGCGACACCCGCCTGCCGGAAGGACCGATTTCGGCGGGCTCGCGCGTGACGCTTAGCGCGGGCTC
AGCGGTCCAAGCCGCGGCTCGAAACCTCCTGACCCGCTTTGGTGAGGTCGGGCGGCCCAACGGCGAAAGTCTCGCGGCAG
CGTTGCAGCGGCTCAATCTTGACGAACTCTCAGCGGATGGCCGGTGGCAACCCGAGCAGGAGAGCCGTTTCTCGCTCTAC
AGCTTTGGCGCTGTTTACGCGGAGGTCGGTGTCGACAAGGACCTGGCCATTCCGCGCGTCCGGCGGGTTGTTGGCGTCTA
CGACGCAGGAAAGATCATCAATCCGAAGGCAGCACGAGGTCAGATGACCGGCGGCATCATCTGGGGGATCGGCCAGGCGC
TCTTGGAGAAATCCGAGATGGATCATACGCTTGGCCGGTTTCTCAGCAAGAACCTCGCCGGCTACCTGGTGCCGGTGAAC
GCTGACGTGCCCGACATCGAAGTCCAGTTCATCGATGGCTTTGACGCCGAGGCAGGACCGCTCGGAGCGCGGGGGATCGG
CGAGCTCGGCGGCATCGGCATCGGAGCCGCTATCGCCAATGCCGTTTTCCACGCGAGCGGTCGCCGTGTGAGATCGCTTC
CCATCCTTCCCGAGCATTTCCTCGGACAGACATGA

Upstream 100 bases:

>100_bases
CCTTCGCCGAGGCGCGGCTGGGACGTCACAACCGCTTTAAGGTCGAATTGGGCATACGCGCTGCGGTGCGGGCCGTCCAA
ATTGCAGGAGGACGCGCCTG

Downstream 100 bases:

>100_bases
CGGCGCCAGATGACAGCAGAAGATGACACCATCATCCGAGTGAGCCGCCTTCAAGCGTCTGCTATTGCCCGCCGGCGATG
TCGACGTGGTGAACACCGTG

Product: xanthine dehydrogenase, molybdenum binding subunit apoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 704; Mature: 703

Protein sequence:

>704_residues
MSAIGVATNRVEGRAKVTGAARYTGDIVAEGLVHGFIVGSTIASGRVLDIDFSRAREAGGVLRVFTHLDMPRLRSLASPP
AGDTHLPMQDDRVLYEGQPVAVVVSETFEQAREAARLVEVTYDRSDFLTDFAGNLSRAEHRPLYGMPPDTQHGDPDTFMQ
RGDVVVGATYATADRHHVPMEPSVTMAMWHGERLILRDAVQGVMLTRNTVAQALGIEPSQVEVQCEFVGGAFGCTGFIWS
HQLLAAALSREIGRPLRLTLTRAQTFTAHGYQPASVQTVRLAATQDGALLATRHDSLLAGSVAGGHVEPVGWGTRSVYAC
DNAAVTHRVVRLNKGNPTPMRSPIEGIGMVATEIAMDELAFELGMNPLELRLRNYTDTDLAHNRPFSLKRLRECYSEGAR
LFGWPQTLPPPATLQDGRELVGYGMATAIFQTFRSEASARVTALQSGRIRVETGTQEIGGGTYTVLAQVAAEVLDVPVAN
VDVVIGDTRLPEGPISAGSRVTLSAGSAVQAAARNLLTRFGEVGRPNGESLAAALQRLNLDELSADGRWQPEQESRFSLY
SFGAVYAEVGVDKDLAIPRVRRVVGVYDAGKIINPKAARGQMTGGIIWGIGQALLEKSEMDHTLGRFLSKNLAGYLVPVN
ADVPDIEVQFIDGFDAEAGPLGARGIGELGGIGIGAAIANAVFHASGRRVRSLPILPEHFLGQT

Sequences:

>Translated_704_residues
MSAIGVATNRVEGRAKVTGAARYTGDIVAEGLVHGFIVGSTIASGRVLDIDFSRAREAGGVLRVFTHLDMPRLRSLASPP
AGDTHLPMQDDRVLYEGQPVAVVVSETFEQAREAARLVEVTYDRSDFLTDFAGNLSRAEHRPLYGMPPDTQHGDPDTFMQ
RGDVVVGATYATADRHHVPMEPSVTMAMWHGERLILRDAVQGVMLTRNTVAQALGIEPSQVEVQCEFVGGAFGCTGFIWS
HQLLAAALSREIGRPLRLTLTRAQTFTAHGYQPASVQTVRLAATQDGALLATRHDSLLAGSVAGGHVEPVGWGTRSVYAC
DNAAVTHRVVRLNKGNPTPMRSPIEGIGMVATEIAMDELAFELGMNPLELRLRNYTDTDLAHNRPFSLKRLRECYSEGAR
LFGWPQTLPPPATLQDGRELVGYGMATAIFQTFRSEASARVTALQSGRIRVETGTQEIGGGTYTVLAQVAAEVLDVPVAN
VDVVIGDTRLPEGPISAGSRVTLSAGSAVQAAARNLLTRFGEVGRPNGESLAAALQRLNLDELSADGRWQPEQESRFSLY
SFGAVYAEVGVDKDLAIPRVRRVVGVYDAGKIINPKAARGQMTGGIIWGIGQALLEKSEMDHTLGRFLSKNLAGYLVPVN
ADVPDIEVQFIDGFDAEAGPLGARGIGELGGIGIGAAIANAVFHASGRRVRSLPILPEHFLGQT
>Mature_703_residues
SAIGVATNRVEGRAKVTGAARYTGDIVAEGLVHGFIVGSTIASGRVLDIDFSRAREAGGVLRVFTHLDMPRLRSLASPPA
GDTHLPMQDDRVLYEGQPVAVVVSETFEQAREAARLVEVTYDRSDFLTDFAGNLSRAEHRPLYGMPPDTQHGDPDTFMQR
GDVVVGATYATADRHHVPMEPSVTMAMWHGERLILRDAVQGVMLTRNTVAQALGIEPSQVEVQCEFVGGAFGCTGFIWSH
QLLAAALSREIGRPLRLTLTRAQTFTAHGYQPASVQTVRLAATQDGALLATRHDSLLAGSVAGGHVEPVGWGTRSVYACD
NAAVTHRVVRLNKGNPTPMRSPIEGIGMVATEIAMDELAFELGMNPLELRLRNYTDTDLAHNRPFSLKRLRECYSEGARL
FGWPQTLPPPATLQDGRELVGYGMATAIFQTFRSEASARVTALQSGRIRVETGTQEIGGGTYTVLAQVAAEVLDVPVANV
DVVIGDTRLPEGPISAGSRVTLSAGSAVQAAARNLLTRFGEVGRPNGESLAAALQRLNLDELSADGRWQPEQESRFSLYS
FGAVYAEVGVDKDLAIPRVRRVVGVYDAGKIINPKAARGQMTGGIIWGIGQALLEKSEMDHTLGRFLSKNLAGYLVPVNA
DVPDIEVQFIDGFDAEAGPLGARGIGELGGIGIGAAIANAVFHASGRRVRSLPILPEHFLGQT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=731, Percent_Identity=23.3926128590971, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI71773480, Length=748, Percent_Identity=23.5294117647059, Blast_Score=121, Evalue=3e-27,
Organism=Escherichia coli, GI1786478, Length=732, Percent_Identity=36.4754098360656, Blast_Score=375, Evalue=1e-105,
Organism=Escherichia coli, GI1789230, Length=756, Percent_Identity=29.1005291005291, Blast_Score=219, Evalue=4e-58,
Organism=Escherichia coli, GI1789246, Length=795, Percent_Identity=25.9119496855346, Blast_Score=158, Evalue=1e-39,
Organism=Caenorhabditis elegans, GI17540638, Length=722, Percent_Identity=23.9612188365651, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17539860, Length=702, Percent_Identity=22.5071225071225, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI32566215, Length=691, Percent_Identity=22.4312590448625, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24647199, Length=699, Percent_Identity=23.8912732474964, Blast_Score=138, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24647193, Length=747, Percent_Identity=23.5609103078983, Blast_Score=118, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24647201, Length=700, Percent_Identity=23.4285714285714, Blast_Score=118, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24647195, Length=725, Percent_Identity=23.5862068965517, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24647197, Length=722, Percent_Identity=23.5457063711911, Blast_Score=114, Evalue=3e-25,
Organism=Drosophila melanogaster, GI17737937, Length=688, Percent_Identity=22.8197674418605, Blast_Score=86, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 75448; Mature: 75316

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAIGVATNRVEGRAKVTGAARYTGDIVAEGLVHGFIVGSTIASGRVLDIDFSRAREAGG
CCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCC
VLRVFTHLDMPRLRSLASPPAGDTHLPMQDDRVLYEGQPVAVVVSETFEQAREAARLVEV
EEEEHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHE
TYDRSDFLTDFAGNLSRAEHRPLYGMPPDTQHGDPDTFMQRGDVVVGATYATADRHHVPM
EECCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCCC
EPSVTMAMWHGERLILRDAVQGVMLTRNTVAQALGIEPSQVEVQCEFVGGAFGCTGFIWS
CCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHH
HQLLAAALSREIGRPLRLTLTRAQTFTAHGYQPASVQTVRLAATQDGALLATRHDSLLAG
HHHHHHHHHHHHCCCEEEEEEECEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCEEEC
SVAGGHVEPVGWGTRSVYACDNAAVTHRVVRLNKGNPTPMRSPIEGIGMVATEIAMDELA
CCCCCCCCCCCCCCCEEEEECCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
FELGMNPLELRLRNYTDTDLAHNRPFSLKRLRECYSEGARLFGWPQTLPPPATLQDGREL
HHHCCCHHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCHHCCHHH
VGYGMATAIFQTFRSEASARVTALQSGRIRVETGTQEIGGGTYTVLAQVAAEVLDVPVAN
HHHHHHHHHHHHHHHHHHHEEEEEECCEEEEECCCHHHCCCHHHHHHHHHHHHHCCCCCC
VDVVIGDTRLPEGPISAGSRVTLSAGSAVQAAARNLLTRFGEVGRPNGESLAAALQRLNL
EEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCH
DELSADGRWQPEQESRFSLYSFGAVYAEVGVDKDLAIPRVRRVVGVYDAGKIINPKAARG
HHCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
QMTGGIIWGIGQALLEKSEMDHTLGRFLSKNLAGYLVPVNADVPDIEVQFIDGFDAEAGP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCC
LGARGIGELGGIGIGAAIANAVFHASGRRVRSLPILPEHFLGQT
CCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCC
>Mature Secondary Structure 
SAIGVATNRVEGRAKVTGAARYTGDIVAEGLVHGFIVGSTIASGRVLDIDFSRAREAGG
CCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCC
VLRVFTHLDMPRLRSLASPPAGDTHLPMQDDRVLYEGQPVAVVVSETFEQAREAARLVEV
EEEEHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHE
TYDRSDFLTDFAGNLSRAEHRPLYGMPPDTQHGDPDTFMQRGDVVVGATYATADRHHVPM
EECCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEEECCCCCCCCC
EPSVTMAMWHGERLILRDAVQGVMLTRNTVAQALGIEPSQVEVQCEFVGGAFGCTGFIWS
CCCEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHH
HQLLAAALSREIGRPLRLTLTRAQTFTAHGYQPASVQTVRLAATQDGALLATRHDSLLAG
HHHHHHHHHHHHCCCEEEEEEECEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCEEEC
SVAGGHVEPVGWGTRSVYACDNAAVTHRVVRLNKGNPTPMRSPIEGIGMVATEIAMDELA
CCCCCCCCCCCCCCCEEEEECCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
FELGMNPLELRLRNYTDTDLAHNRPFSLKRLRECYSEGARLFGWPQTLPPPATLQDGREL
HHHCCCHHHEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCHHCCHHH
VGYGMATAIFQTFRSEASARVTALQSGRIRVETGTQEIGGGTYTVLAQVAAEVLDVPVAN
HHHHHHHHHHHHHHHHHHHEEEEEECCEEEEECCCHHHCCCHHHHHHHHHHHHHCCCCCC
VDVVIGDTRLPEGPISAGSRVTLSAGSAVQAAARNLLTRFGEVGRPNGESLAAALQRLNL
EEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCH
DELSADGRWQPEQESRFSLYSFGAVYAEVGVDKDLAIPRVRRVVGVYDAGKIINPKAARG
HHCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
QMTGGIIWGIGQALLEKSEMDHTLGRFLSKNLAGYLVPVNADVPDIEVQFIDGFDAEAGP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCC
LGARGIGELGGIGIGAAIANAVFHASGRRVRSLPILPEHFLGQT
CCCCCCHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]