| Definition | Mesorhizobium sp. BNC1, complete genome. |
|---|---|
| Accession | NC_008254 |
| Length | 4,412,446 |
Click here to switch to the map view.
The map label for this gene is trbE [H]
Identifier: 110632866
GI number: 110632866
Start: 559468
End: 561906
Strand: Reverse
Name: trbE [H]
Synonym: Meso_0506
Alternate gene names: 110632866
Gene position: 561906-559468 (Counterclockwise)
Preceding gene: 110632867
Following gene: 110632865
Centisome position: 12.73
GC content: 66.42
Gene sequence:
>2439_bases ATGATGAACCTCGCCGAATATCGCCGAACCGCGACCCGCCTTGCAGATTTCCTGCCCTGGGCGGCGCTGGTCGGCGAAGG GGTCGTGCTGAACAAGGACGGCAGCTTCCAGCGCACCGCGCGCTTTCGTGGTCCCGATCTCGACTCTGCTGTGGCCGCCG AACTGGTGGCAGTCGCCAGTCGCCTCAACAACGCCTTCCGGCGTCTGGGCTCGGGCTGGGCGATCTTCGTCGAAGCGCAG CGCCACGAAGCCGCCTCCTATCCGGCAAGCCGCTTCGCGGACGCCGCCTCCGCCCTCGTTGATGCGGAGCGCAAGGCCGA CTTCGAGGAAGCGGACGCGCATTACGAGTCGAGCTACTTCTTGACCTTTCTCTATCTCCCGCCTGCCGAGGACGCCGCGC GGGCGGAAACCTGGCTCTACGAGGGTCGCCAACAGTCCGGCGTCGATCCCCATGAAGCCCTCGCGGCCTTCATTGACCGC ACAAACCGCGTCCTCCAGCTCGTCGATGGCTTCATGCCGGAATGCCGGTGGCTCGATGACGCCGAGACCCTGACTTACCT GCACTCGACCGTCTCGACGAAGCGCCACCGCGTCCGCGTGCCCGAAACGCCGATCTACCTCGATGCGCTTCTCGCCGTTG AGCCGTTGACCGGCGGCCTCGAGCCACGGCTCGGCGCCGCTCATCTGCGCGTGCTGACGATCAACGGCTTTCCGACGGCG ACGACGCCAGGGATTCTCGACGATCTCAACCGGCTCGCCTTTCCCTATCGCTGGTCCACGCGGGCGATCCTCCTCGACAA GACGGACGCCACGAAACTGCTGACGCGCATCCGGCGGCAGTGGTTCGCCAAGCGCAAGTCGATCGCCGCAATCCTGAAGG AGGTAATGACCAACGAGGCCTCCGCACTCGTCGATACGGACGCTGCGAACAAGGCCGCCGATGCCGACATGGCCCTGCAG GAGCTTGGGGCCGACTATGCCGGTCAGGCCTATGTGACCGCCACGGTCACAGTCTGGGACGCCGATCCGCGCACCGCCGA CGAGAAGTTGCGCCTCGTGGAAAAGGTGATCCAGGGCCGCGACTTCACCGCGATGTCCGAGACCATCAATGCCGTCGATG CCTGGCTCGGTTCGCTGCCCGGCCATGTCTACGCCAACGTCCGCCAGCCACCGATCTCCACTCTAAACCTCGCCCACATG ATTCCGCTCTCGGCGGTCTGGGCCGGGCCGGAACGGGACGAGCATTTCGGAGCGCCGCCGCTGCTGTACGGCAAGACCGA AGGGAGCACGCCGTTCCGCTTTTCGCTGCATGTCGGCGACGTCGGCCACACACTGGTCGTCGGGCCGACAGGCGCGGGCA AGTCCGTGCTGCTCGCGCTCATCGCACTTCAGTTCCGGCGCTATCCGGGCAGCCAAGTCTTCGCCTTCGACTTCGGCGGC TCCATTCGCGCGGCCGCGCTCGCCATGGGAGGCGATTGGCACGACCTCGGTGGCAGCCTGACGGACGGCGCCGCGTCGTC GGTCTCCCTCCAGCCACTCGCACGCGTTCACGAGACCCATGAGCGTGCCTGGGCAGCCGACTGGATTGCCGCCATCCTTG CCCGCGAGAGCGTCACGATCACGCCGGAAGTGAAAGAACATCTCTGGACGGCGCTGACCTCGCTGGCGTCCGCGCCGATC ACAGAGCGCACGCTGACGGGCCTCGCCGTCCTCCTCCAGTCGAACGATCTCAAGCAAGCGCTGCGCCCCTTTTGCGTCGG CGGTGCCTACGGACGGCTGCTGGACGCCGAAGGCGAGCAGCTAGGGGAAGCTGCGGTCCAGGCCTTTGAAACCGAGGGGC TGATCGGCGGCGGCGCGGCGCCGGCGGTCCTCGCCTATCTCTTCCATCGGATCGGCGACCGTCTGGATGGACGGCCCACG CTCCTGATCGTCGACGAAGGCTGGCTCGCGCTCGACGATGAAGGCTTCGCGGCGCAACTGCGCGAATGGCTGAAGACGCT GCGCAAGAAGAACGCGTCGGTCGTCTTCGCCACGCAATCGCTGGCCGACATCGATGGGAGCGCGATCGCTCCGGCCATCA TCGAAAGCTGCCAGACGCGCCTTTTGCTGCCGAACGAACGCGCGATCGAACCCCAGATCACCACGATCTACCGGCGCTTC GGCTTGAACGACCGCCAGATCGAGATCCTCAGCCGGGCCACACCCAAGCGCGACTATTACTGCCAGTCGCGGCGCGGCAA CCGGCTATTCGAGTTGGGGCTCTCCGAAGTCGCCCTCGCGCTCTGCGCGGCATCCTCGAAAACTGATCAGGCCGCCATCG AGGCGATCCTCGCCGAGCATGGCCGCGACGGCTTCCTGTCCGCCTGGCTGCGCGCCCGCGATGTCGGATGGGCCGCCGAC CTCATTCCCGATCTCACCAACCTGGAGCCCAAGCCATGA
Upstream 100 bases:
>100_bases TTTCGCCGCCGTTTGGGCAGCAAAGCGCGATCCGCTCTTTGTCGAAGTGGGCCGCCGGCATCTGCGCATTCCGGGCCATC TCTCGGTGTGAGGCGTGGCC
Downstream 100 bases:
>100_bases TGATCCGACGCTCTCGCGCGGCGCTGTTCGCCGCAACCATCCTGTCGCTGCCCGTCGCCTTCTCGCCCGTGTTCGTGACC CCGGCAGCGGCGCAGTGGGT
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MMNLAEYRRTATRLADFLPWAALVGEGVVLNKDGSFQRTARFRGPDLDSAVAAELVAVASRLNNAFRRLGSGWAIFVEAQ RHEAASYPASRFADAASALVDAERKADFEEADAHYESSYFLTFLYLPPAEDAARAETWLYEGRQQSGVDPHEALAAFIDR TNRVLQLVDGFMPECRWLDDAETLTYLHSTVSTKRHRVRVPETPIYLDALLAVEPLTGGLEPRLGAAHLRVLTINGFPTA TTPGILDDLNRLAFPYRWSTRAILLDKTDATKLLTRIRRQWFAKRKSIAAILKEVMTNEASALVDTDAANKAADADMALQ ELGADYAGQAYVTATVTVWDADPRTADEKLRLVEKVIQGRDFTAMSETINAVDAWLGSLPGHVYANVRQPPISTLNLAHM IPLSAVWAGPERDEHFGAPPLLYGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALIALQFRRYPGSQVFAFDFGG SIRAAALAMGGDWHDLGGSLTDGAASSVSLQPLARVHETHERAWAADWIAAILARESVTITPEVKEHLWTALTSLASAPI TERTLTGLAVLLQSNDLKQALRPFCVGGAYGRLLDAEGEQLGEAAVQAFETEGLIGGGAAPAVLAYLFHRIGDRLDGRPT LLIVDEGWLALDDEGFAAQLREWLKTLRKKNASVVFATQSLADIDGSAIAPAIIESCQTRLLLPNERAIEPQITTIYRRF GLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQAAIEAILAEHGRDGFLSAWLRARDVGWAAD LIPDLTNLEPKP
Sequences:
>Translated_812_residues MMNLAEYRRTATRLADFLPWAALVGEGVVLNKDGSFQRTARFRGPDLDSAVAAELVAVASRLNNAFRRLGSGWAIFVEAQ RHEAASYPASRFADAASALVDAERKADFEEADAHYESSYFLTFLYLPPAEDAARAETWLYEGRQQSGVDPHEALAAFIDR TNRVLQLVDGFMPECRWLDDAETLTYLHSTVSTKRHRVRVPETPIYLDALLAVEPLTGGLEPRLGAAHLRVLTINGFPTA TTPGILDDLNRLAFPYRWSTRAILLDKTDATKLLTRIRRQWFAKRKSIAAILKEVMTNEASALVDTDAANKAADADMALQ ELGADYAGQAYVTATVTVWDADPRTADEKLRLVEKVIQGRDFTAMSETINAVDAWLGSLPGHVYANVRQPPISTLNLAHM IPLSAVWAGPERDEHFGAPPLLYGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALIALQFRRYPGSQVFAFDFGG SIRAAALAMGGDWHDLGGSLTDGAASSVSLQPLARVHETHERAWAADWIAAILARESVTITPEVKEHLWTALTSLASAPI TERTLTGLAVLLQSNDLKQALRPFCVGGAYGRLLDAEGEQLGEAAVQAFETEGLIGGGAAPAVLAYLFHRIGDRLDGRPT LLIVDEGWLALDDEGFAAQLREWLKTLRKKNASVVFATQSLADIDGSAIAPAIIESCQTRLLLPNERAIEPQITTIYRRF GLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQAAIEAILAEHGRDGFLSAWLRARDVGWAAD LIPDLTNLEPKP >Mature_812_residues MMNLAEYRRTATRLADFLPWAALVGEGVVLNKDGSFQRTARFRGPDLDSAVAAELVAVASRLNNAFRRLGSGWAIFVEAQ RHEAASYPASRFADAASALVDAERKADFEEADAHYESSYFLTFLYLPPAEDAARAETWLYEGRQQSGVDPHEALAAFIDR TNRVLQLVDGFMPECRWLDDAETLTYLHSTVSTKRHRVRVPETPIYLDALLAVEPLTGGLEPRLGAAHLRVLTINGFPTA TTPGILDDLNRLAFPYRWSTRAILLDKTDATKLLTRIRRQWFAKRKSIAAILKEVMTNEASALVDTDAANKAADADMALQ ELGADYAGQAYVTATVTVWDADPRTADEKLRLVEKVIQGRDFTAMSETINAVDAWLGSLPGHVYANVRQPPISTLNLAHM IPLSAVWAGPERDEHFGAPPLLYGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALIALQFRRYPGSQVFAFDFGG SIRAAALAMGGDWHDLGGSLTDGAASSVSLQPLARVHETHERAWAADWIAAILARESVTITPEVKEHLWTALTSLASAPI TERTLTGLAVLLQSNDLKQALRPFCVGGAYGRLLDAEGEQLGEAAVQAFETEGLIGGGAAPAVLAYLFHRIGDRLDGRPT LLIVDEGWLALDDEGFAAQLREWLKTLRKKNASVVFATQSLADIDGSAIAPAIIESCQTRLLLPNERAIEPQITTIYRRF GLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQAAIEAILAEHGRDGFLSAWLRARDVGWAAD LIPDLTNLEPKP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 88651; Mature: 88651
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMNLAEYRRTATRLADFLPWAALVGEGVVLNKDGSFQRTARFRGPDLDSAVAAELVAVAS CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHH RLNNAFRRLGSGWAIFVEAQRHEAASYPASRFADAASALVDAERKADFEEADAHYESSYF HHHHHHHHHCCCEEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEE LTFLYLPPAEDAARAETWLYEGRQQSGVDPHEALAAFIDRTNRVLQLVDGFMPECRWLDD EEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AETLTYLHSTVSTKRHRVRVPETPIYLDALLAVEPLTGGLEPRLGAAHLRVLTINGFPTA HHHHHHHHHHHHHCHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCC TTPGILDDLNRLAFPYRWSTRAILLDKTDATKLLTRIRRQWFAKRKSIAAILKEVMTNEA CCCHHHHHHHHHCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH SALVDTDAANKAADADMALQELGADYAGQAYVTATVTVWDADPRTADEKLRLVEKVIQGR HHEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCC DFTAMSETINAVDAWLGSLPGHVYANVRQPPISTLNLAHMIPLSAVWAGPERDEHFGAPP CCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCCCCC LLYGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALIALQFRRYPGSQVFAFDFGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC SIRAAALAMGGDWHDLGGSLTDGAASSVSLQPLARVHETHERAWAADWIAAILARESVTI CHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE TPEVKEHLWTALTSLASAPITERTLTGLAVLLQSNDLKQALRPFCVGGAYGRLLDAEGEQ CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHEECCCHHH LGEAAVQAFETEGLIGGGAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALDDEGFAAQL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCCCHHHHH REWLKTLRKKNASVVFATQSLADIDGSAIAPAIIESCQTRLLLPNERAIEPQITTIYRRF HHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHH GLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQAAIEAILAEH CCCCCHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC GRDGFLSAWLRARDVGWAADLIPDLTNLEPKP CCCHHHHHHHHHHCCCHHHHHCCHHCCCCCCC >Mature Secondary Structure MMNLAEYRRTATRLADFLPWAALVGEGVVLNKDGSFQRTARFRGPDLDSAVAAELVAVAS CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHH RLNNAFRRLGSGWAIFVEAQRHEAASYPASRFADAASALVDAERKADFEEADAHYESSYF HHHHHHHHHCCCEEEEEEECHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEE LTFLYLPPAEDAARAETWLYEGRQQSGVDPHEALAAFIDRTNRVLQLVDGFMPECRWLDD EEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC AETLTYLHSTVSTKRHRVRVPETPIYLDALLAVEPLTGGLEPRLGAAHLRVLTINGFPTA HHHHHHHHHHHHHCHHEEECCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCC TTPGILDDLNRLAFPYRWSTRAILLDKTDATKLLTRIRRQWFAKRKSIAAILKEVMTNEA CCCHHHHHHHHHCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH SALVDTDAANKAADADMALQELGADYAGQAYVTATVTVWDADPRTADEKLRLVEKVIQGR HHEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCC DFTAMSETINAVDAWLGSLPGHVYANVRQPPISTLNLAHMIPLSAVWAGPERDEHFGAPP CCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCHHHHCCCCCCCCCCCCCC LLYGKTEGSTPFRFSLHVGDVGHTLVVGPTGAGKSVLLALIALQFRRYPGSQVFAFDFGG EEEECCCCCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC SIRAAALAMGGDWHDLGGSLTDGAASSVSLQPLARVHETHERAWAADWIAAILARESVTI CHHHHHHCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE TPEVKEHLWTALTSLASAPITERTLTGLAVLLQSNDLKQALRPFCVGGAYGRLLDAEGEQ CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHEECCCHHH LGEAAVQAFETEGLIGGGAAPAVLAYLFHRIGDRLDGRPTLLIVDEGWLALDDEGFAAQL HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEECCCCHHHHH REWLKTLRKKNASVVFATQSLADIDGSAIAPAIIESCQTRLLLPNERAIEPQITTIYRRF HHHHHHHHHCCCCEEEEECHHHHCCCCHHHHHHHHHHHCEEECCCCCCCCHHHHHHHHHH GLNDRQIEILSRATPKRDYYCQSRRGNRLFELGLSEVALALCAASSKTDQAAIEAILAEH CCCCCHHHHHHHCCCCCCCEECCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC GRDGFLSAWLRARDVGWAADLIPDLTNLEPKP CCCHHHHHHHHHHCCCHHHHHCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]