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The map label for this gene is oppC [H]

Identifier: 110632398

GI number: 110632398

Start: 43847

End: 44986

Strand: Reverse

Name: oppC [H]

Synonym: Meso_0036

Alternate gene names: 110632398

Gene position: 44986-43847 (Counterclockwise)

Preceding gene: 110632399

Following gene: 110632397

Centisome position: 1.02

GC content: 61.23

Gene sequence:

>1140_bases
ATGACTGATATCGCAACCAACACGCCCGAGCTTGCCGCCGGCACAGCGGTAAAGGGGCGATCCCTCTGGGCGACAGCGCT
GATGCGGCTACGCCGCAACAAGGCTGCCATGGTGAGCCTTCTCATTCTCATACTGTATATTTTCGCCGGTATCTCTGGCC
CAATGCTATCGCCGCATCACTACGCGACCGTCTATCCCGAGTATGTGCGAGTGCCGGCGAGCCTCGAGGCATATCCGCGT
GCAGAAGAGATCATTCCGCAGGCGGAAAGCGTGCTCACCCGTACACGGCTCCAAATCGACGCGATTGAGGTCAACGGAAA
CACGCTGCACGTCGAGGCCTCGTCCGAGCGTGAGATCGATCCGCGTATGACCCGCTATCTGGAACGTTCCGACATCTTCT
CCAATGTCCGGATTGTGGAAACGAGCGGCGACAGCCGCTCGGTCGTTATGGAGGCGGATGTGGAGCGGTTGCGTTTCCTC
TTCGGGACCGATGCCAACGGAAGAGACCTGCTTGCCCGCATCCTGGTCTCCATCCGCATCTCGCTTATGATCGGCGCGCT
GGCGACGGGCGTGGCGCTTATCATCGGCGTTGCCTGGGGGGCGACGGCAGGCTTTCTCGGAGGACGCGTCGACAATGTGA
TGATGCGCGTGGTGGATGTTTTATACGCCCTGCCCTTCACGTTCTTCGCGATTCTGCTCGTGGTCTTCTTCGGCCGAAAC
GTGGTGCTCATGTTCGTTGCCGTGGGAGCGGTGGAATGGCTCGACATGGCGCGCATCGTGCGCGGACAGACCATCTCGCT
ACGCAGGCGTGAATTCGTGCAGGCGGCCGAGGCGCTGGGAGTAAGCTCCGGCGGCATCCTGCGCCGGCATATCATTCCCA
ACACGCTCGGCCCCGTCATCATCTATATGACGTTGCTCATCCCGAAGGTGATCCTGCTAGAGAGCTTCCTCTCCTTCCTT
GGCCTCGGAGTGCAGGAGCCGCTAACAAGTCTCGGCGTGCTGATCTCCGAGGGAGCCCGCAACATGCGCAGCGCGCCCTA
CATGCTGATCTACCCCTCGATCGCGCTGACGCTGCTCCTCTTCTCGCTTAACTTCCTGGGCGACGGCCTGCGCGATGCGC
TCGACCCGAGGGACCGCTGA

Upstream 100 bases:

>100_bases
ACGCTGGTGATGGGAACCGTGATCATCATTGCCGTCTTCGTTGTGGTCTTCAATCTGATCGTCGATCTGCTTTACGCCGC
CTTGGATCCGAGGGTGCGCT

Downstream 100 bases:

>100_bases
TATGAGCGCCGAACGCATTTTCGATATCCGCAACCTCCATGTGACGTTCGATACGCCGGATGGCCGCATAAATGCCGTGC
GCGGCGTCGACATGCATGTG

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MTDIATNTPELAAGTAVKGRSLWATALMRLRRNKAAMVSLLILILYIFAGISGPMLSPHHYATVYPEYVRVPASLEAYPR
AEEIIPQAESVLTRTRLQIDAIEVNGNTLHVEASSEREIDPRMTRYLERSDIFSNVRIVETSGDSRSVVMEADVERLRFL
FGTDANGRDLLARILVSIRISLMIGALATGVALIIGVAWGATAGFLGGRVDNVMMRVVDVLYALPFTFFAILLVVFFGRN
VVLMFVAVGAVEWLDMARIVRGQTISLRRREFVQAAEALGVSSGGILRRHIIPNTLGPVIIYMTLLIPKVILLESFLSFL
GLGVQEPLTSLGVLISEGARNMRSAPYMLIYPSIALTLLLFSLNFLGDGLRDALDPRDR

Sequences:

>Translated_379_residues
MTDIATNTPELAAGTAVKGRSLWATALMRLRRNKAAMVSLLILILYIFAGISGPMLSPHHYATVYPEYVRVPASLEAYPR
AEEIIPQAESVLTRTRLQIDAIEVNGNTLHVEASSEREIDPRMTRYLERSDIFSNVRIVETSGDSRSVVMEADVERLRFL
FGTDANGRDLLARILVSIRISLMIGALATGVALIIGVAWGATAGFLGGRVDNVMMRVVDVLYALPFTFFAILLVVFFGRN
VVLMFVAVGAVEWLDMARIVRGQTISLRRREFVQAAEALGVSSGGILRRHIIPNTLGPVIIYMTLLIPKVILLESFLSFL
GLGVQEPLTSLGVLISEGARNMRSAPYMLIYPSIALTLLLFSLNFLGDGLRDALDPRDR
>Mature_378_residues
TDIATNTPELAAGTAVKGRSLWATALMRLRRNKAAMVSLLILILYIFAGISGPMLSPHHYATVYPEYVRVPASLEAYPRA
EEIIPQAESVLTRTRLQIDAIEVNGNTLHVEASSEREIDPRMTRYLERSDIFSNVRIVETSGDSRSVVMEADVERLRFLF
GTDANGRDLLARILVSIRISLMIGALATGVALIIGVAWGATAGFLGGRVDNVMMRVVDVLYALPFTFFAILLVVFFGRNV
VLMFVAVGAVEWLDMARIVRGQTISLRRREFVQAAEALGVSSGGILRRHIIPNTLGPVIIYMTLLIPKVILLESFLSFLG
LGVQEPLTSLGVLISEGARNMRSAPYMLIYPSIALTLLLFSLNFLGDGLRDALDPRDR

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=219, Percent_Identity=58.9041095890411, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1787054, Length=221, Percent_Identity=38.0090497737557, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787760, Length=217, Percent_Identity=33.6405529953917, Blast_Score=137, Evalue=9e-34,
Organism=Escherichia coli, GI1788505, Length=269, Percent_Identity=31.9702602230483, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789889, Length=220, Percent_Identity=32.7272727272727, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1789964, Length=218, Percent_Identity=37.1559633027523, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1787549, Length=219, Percent_Identity=29.2237442922374, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 41691; Mature: 41560

Theoretical pI: Translated: 9.20; Mature: 9.20

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDIATNTPELAAGTAVKGRSLWATALMRLRRNKAAMVSLLILILYIFAGISGPMLSPHH
CCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YATVYPEYVRVPASLEAYPRAEEIIPQAESVLTRTRLQIDAIEVNGNTLHVEASSEREID
CEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEECCCCCCCC
PRMTRYLERSDIFSNVRIVETSGDSRSVVMEADVERLRFLFGTDANGRDLLARILVSIRI
HHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SLMIGALATGVALIIGVAWGATAGFLGGRVDNVMMRVVDVLYALPFTFFAILLVVFFGRN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VVLMFVAVGAVEWLDMARIVRGQTISLRRREFVQAAEALGVSSGGILRRHIIPNTLGPVI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHCCCCHHHHHH
IYMTLLIPKVILLESFLSFLGLGVQEPLTSLGVLISEGARNMRSAPYMLIYPSIALTLLL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
FSLNFLGDGLRDALDPRDR
HHHHHHCCHHHHCCCCCCC
>Mature Secondary Structure 
TDIATNTPELAAGTAVKGRSLWATALMRLRRNKAAMVSLLILILYIFAGISGPMLSPHH
CCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
YATVYPEYVRVPASLEAYPRAEEIIPQAESVLTRTRLQIDAIEVNGNTLHVEASSEREID
CEEECHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEEEECCCEEEEECCCCCCCC
PRMTRYLERSDIFSNVRIVETSGDSRSVVMEADVERLRFLFGTDANGRDLLARILVSIRI
HHHHHHHHHHHHHCCCEEEEECCCCCEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
SLMIGALATGVALIIGVAWGATAGFLGGRVDNVMMRVVDVLYALPFTFFAILLVVFFGRN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VVLMFVAVGAVEWLDMARIVRGQTISLRRREFVQAAEALGVSSGGILRRHIIPNTLGPVI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCEEEHHCCCCHHHHHH
IYMTLLIPKVILLESFLSFLGLGVQEPLTSLGVLISEGARNMRSAPYMLIYPSIALTLLL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH
FSLNFLGDGLRDALDPRDR
HHHHHHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]