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The map label for this gene is ybgF [H]

Identifier: 109948228

GI number: 109948228

Start: 1535376

End: 1536152

Strand: Reverse

Name: ybgF [H]

Synonym: Hac_1762

Alternate gene names: 109948228

Gene position: 1536152-1535376 (Counterclockwise)

Preceding gene: 109948229

Following gene: 109948227

Centisome position: 98.86

GC content: 43.89

Gene sequence:

>777_bases
TTGCTTACATGGGCACAGAGATTATGGGCGTTGCCGCAAGGAGAGACTAAAGACGCTAAAAAGTCATGCCCAAAGCGGTT
AAAGCGACTTTATGGCGGATCGTGTTTTTTCTTTTTGGGGGCGGTGTTTGTGGTGTCGGTGTTTTTGCCCATGACGGATG
GCGGTTTGACGCAAAGCCCTTTTGTGAGCGTTTTAGAAAAAATCCCTCTGCCTTTTTTGGGCGTGGGTATTCCTTATGCG
GCAGATATTATGAATTTTGTTATTGTGACAGCGATTTTATCCACCGCTAATTCTAGACTATACGCTTCAGGGAGGATGAT
TTATGGCTTGAGTCAAAAAAAGATGTTTTTCCCCATTTTTGCAAAGCTTAATGCTTTGGGCACGCCCACTTATGCTTTGT
ATTTATCTTTAGGGGTTACACTTGTTGGCATGCTCACTGATGCGTTTGCACCAGAAAAAATCATGGCAAGCTTAATTAAT
GTGGTGAGCTTTATGGTGATTATTGTATGGATTAGCATCAGCGTGGCACAGTATAGATTTAGAAAAGCGTATGTGGCTTC
AGGCAAGTCTTTAAAAGATTTGCCCTATAAAGCCCCTTTTAACCCCTTAATCCAAATTGTTGGCATCGGCGGGTGCTTGG
TGGGGCTTGTGGGTGCGTATATGGATGCGAATGAACGCATTGGAGGGTATCTCACGCTAGTGTTTATGGGGCTTTGCTAT
GTGGCGTATTACGCGAGCAAAAACCAATGGGGCTATCAGCAAGAAAAAGGACTTTAA

Upstream 100 bases:

>100_bases
CTTTGAAGGGGTGTTTGCTAATTTCTATTTTAGTGGGGAGGTTCAAGGGCTAGAGAAGGGCTTTTCCCTAAAGGCGTGGG
GGCGATTTTAACGGTGATTT

Downstream 100 bases:

>100_bases
AGGAGCGATAAAATGATTTTAGTAGGATTAGAAGCCGAGTTAGGGGCGTCAAAAAAAGGCACAGATGCAGGCGTTAGGCG
TTTGAGAGAGGCTTTAAGCC

Product: amino acid permease fragment 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MLTWAQRLWALPQGETKDAKKSCPKRLKRLYGGSCFFFLGAVFVVSVFLPMTDGGLTQSPFVSVLEKIPLPFLGVGIPYA
ADIMNFVIVTAILSTANSRLYASGRMIYGLSQKKMFFPIFAKLNALGTPTYALYLSLGVTLVGMLTDAFAPEKIMASLIN
VVSFMVIIVWISISVAQYRFRKAYVASGKSLKDLPYKAPFNPLIQIVGIGGCLVGLVGAYMDANERIGGYLTLVFMGLCY
VAYYASKNQWGYQQEKGL

Sequences:

>Translated_258_residues
MLTWAQRLWALPQGETKDAKKSCPKRLKRLYGGSCFFFLGAVFVVSVFLPMTDGGLTQSPFVSVLEKIPLPFLGVGIPYA
ADIMNFVIVTAILSTANSRLYASGRMIYGLSQKKMFFPIFAKLNALGTPTYALYLSLGVTLVGMLTDAFAPEKIMASLIN
VVSFMVIIVWISISVAQYRFRKAYVASGKSLKDLPYKAPFNPLIQIVGIGGCLVGLVGAYMDANERIGGYLTLVFMGLCY
VAYYASKNQWGYQQEKGL
>Mature_258_residues
MLTWAQRLWALPQGETKDAKKSCPKRLKRLYGGSCFFFLGAVFVVSVFLPMTDGGLTQSPFVSVLEKIPLPFLGVGIPYA
ADIMNFVIVTAILSTANSRLYASGRMIYGLSQKKMFFPIFAKLNALGTPTYALYLSLGVTLVGMLTDAFAPEKIMASLIN
VVSFMVIIVWISISVAQYRFRKAYVASGKSLKDLPYKAPFNPLIQIVGIGGCLVGLVGAYMDANERIGGYLTLVFMGLCY
VAYYASKNQWGYQQEKGL

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI87081708, Length=243, Percent_Identity=39.0946502057613, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI1788480, Length=218, Percent_Identity=33.0275229357798, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI48994972, Length=232, Percent_Identity=26.7241379310345, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786602, Length=241, Percent_Identity=27.8008298755187, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87081915, Length=190, Percent_Identity=31.0526315789474, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1786789, Length=235, Percent_Identity=26.3829787234043, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1786302, Length=182, Percent_Identity=28.021978021978, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789017, Length=183, Percent_Identity=28.9617486338798, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790653, Length=186, Percent_Identity=29.5698924731183, Blast_Score=75, Evalue=4e-15,
Organism=Saccharomyces cerevisiae, GI6320772, Length=196, Percent_Identity=27.0408163265306, Blast_Score=89, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6319608, Length=210, Percent_Identity=27.6190476190476, Blast_Score=86, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6322892, Length=202, Percent_Identity=24.2574257425743, Blast_Score=74, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324059, Length=198, Percent_Identity=25.2525252525253, Blast_Score=72, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6319543, Length=190, Percent_Identity=24.2105263157895, Blast_Score=72, Evalue=7e-14,
Organism=Saccharomyces cerevisiae, GI6324061, Length=196, Percent_Identity=24.4897959183673, Blast_Score=72, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324553, Length=275, Percent_Identity=25.0909090909091, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6321053, Length=241, Percent_Identity=23.6514522821577, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319824, Length=197, Percent_Identity=23.8578680203046, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321629, Length=261, Percent_Identity=22.2222222222222, Blast_Score=68, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324990, Length=195, Percent_Identity=29.2307692307692, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6320717, Length=197, Percent_Identity=23.3502538071066, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322967, Length=190, Percent_Identity=27.3684210526316, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6319542, Length=218, Percent_Identity=26.605504587156, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 28350; Mature: 28350

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCCHHHCCC
>Mature Secondary Structure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HHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]