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The map label for this gene is rlpA [C]

Identifier: 109948152

GI number: 109948152

Start: 1459879

End: 1460826

Strand: Reverse

Name: rlpA [C]

Synonym: Hac_1678

Alternate gene names: 109948152

Gene position: 1460826-1459879 (Counterclockwise)

Preceding gene: 109948153

Following gene: 109948151

Centisome position: 94.01

GC content: 40.08

Gene sequence:

>948_bases
ATGGGGTGGGCGTTGAAAAAAATTTGTTTTTTAGGGCTTGTCCTTTTAATTAGTGCTTGCACGACTAAAAACGATGGGGT
CAAAAATTTATCTTACAAGCATGAAGGCTTGCGTGCTTATGAAAACGCTAAAGACTATGACCCCGTGACCAAAAAAGCCA
CCTATAAACGCAATTTTTTTGAACGCCATTTCAAACATCACACCAATGTGCAAGACACTAGTGCAAAAACCCAAAACCTA
AATAATGGCATGCGTGATTCTAGTGCGATCCAAAGAGCTACCATGCGCCCTTATCAAGTGGGAGACAAGTGGTATTACCC
CACTAAAGTGGATTTAGGCGAAAAATTTGATGGTATTGCGAGCTGGTATGGTCCCAATTTCCATGCCAAAAAGACGAGTA
ATGGGGAAATTTATAATATGTACGCCCACACCGCTGCGCACAAGACTTTACCCATGAACACCATTGTCAAAGTCATTAAT
GTTGAAAATAATTTAAGCACCATTGTGCGCATTAACGATAGAGGTCCTTTTGTGAGTGATCGCATCATTGATTTGTCTAA
TGCGGCCGCTAGGGATATTGATATGGTTAAAAAAGGTACGGCCAGCGTCCGCCTTATTATTTTGGGTTTTAGCGGGGTTA
TCTCCAAACAATATGAGCAATCGTTTAACGCCAATTCTTCAAAGATTTTGCACAAAGAATTTAGAGTTGGCGAGAGTGAA
AAAAGCGTGAGCGGAGGGAAATTTTCCTTACAAATGGGGGCTTTTAGAAACCAAATGGGAGCCAAGACTTTAGTGGATAA
ATTGCAAATAGAGAGCAGGAATTACAGTGTTAAGGTTGCTTTTAAAGAGGGGTTGTATAAGGTTTTAATCCAAGGGTTTC
AAAGCGAAGAAGAGGCTAGAGATTTTATGAAACAATACAATCAAAATGCGGTATTAACGAGAGAATGA

Upstream 100 bases:

>100_bases
GCATCCAATTAGCCAACAATCTTAAAGATTCCAATATCTTTACCCACCAACGCTTGCTCATCCCTGCCAATAAAAAACTC
ATCGCTATAAGGGAATTTTA

Downstream 100 bases:

>100_bases
TTAAATTATTGCTTTTAGATGTGGATGGTACGCTCACGGATGGGTCGTTGTATTTTGATGAAAATTTTCACGAGCTCAAG
GCTTTTAATGTCAAAGATGG

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 314

Protein sequence:

>315_residues
MGWALKKICFLGLVLLISACTTKNDGVKNLSYKHEGLRAYENAKDYDPVTKKATYKRNFFERHFKHHTNVQDTSAKTQNL
NNGMRDSSAIQRATMRPYQVGDKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTIVKVIN
VENNLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIILGFSGVISKQYEQSFNANSSKILHKEFRVGESE
KSVSGGKFSLQMGAFRNQMGAKTLVDKLQIESRNYSVKVAFKEGLYKVLIQGFQSEEEARDFMKQYNQNAVLTRE

Sequences:

>Translated_315_residues
MGWALKKICFLGLVLLISACTTKNDGVKNLSYKHEGLRAYENAKDYDPVTKKATYKRNFFERHFKHHTNVQDTSAKTQNL
NNGMRDSSAIQRATMRPYQVGDKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTIVKVIN
VENNLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIILGFSGVISKQYEQSFNANSSKILHKEFRVGESE
KSVSGGKFSLQMGAFRNQMGAKTLVDKLQIESRNYSVKVAFKEGLYKVLIQGFQSEEEARDFMKQYNQNAVLTRE
>Mature_314_residues
GWALKKICFLGLVLLISACTTKNDGVKNLSYKHEGLRAYENAKDYDPVTKKATYKRNFFERHFKHHTNVQDTSAKTQNLN
NGMRDSSAIQRATMRPYQVGDKWYYPTKVDLGEKFDGIASWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTIVKVINV
ENNLSTIVRINDRGPFVSDRIIDLSNAAARDIDMVKKGTASVRLIILGFSGVISKQYEQSFNANSSKILHKEFRVGESEK
SVSGGKFSLQMGAFRNQMGAKTLVDKLQIESRNYSVKVAFKEGLYKVLIQGFQSEEEARDFMKQYNQNAVLTRE

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=98, Percent_Identity=35.7142857142857, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 35740; Mature: 35609

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGWALKKICFLGLVLLISACTTKNDGVKNLSYKHEGLRAYENAKDYDPVTKKATYKRNFF
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ERHFKHHTNVQDTSAKTQNLNNGMRDSSAIQRATMRPYQVGDKWYYPTKVDLGEKFDGIA
HHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEECCCCEECCCCCCCCCHHHHHH
SWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTIVKVINVENNLSTIVRINDRGPFVSD
HHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHEEEECCCCCEEEEEECCCCCCCCC
RIIDLSNAAARDIDMVKKGTASVRLIILGFSGVISKQYEQSFNANSSKILHKEFRVGESE
CEEECCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
KSVSGGKFSLQMGAFRNQMGAKTLVDKLQIESRNYSVKVAFKEGLYKVLIQGFQSEEEAR
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHH
DFMKQYNQNAVLTRE
HHHHHHCCCCEEECC
>Mature Secondary Structure 
GWALKKICFLGLVLLISACTTKNDGVKNLSYKHEGLRAYENAKDYDPVTKKATYKRNFF
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
ERHFKHHTNVQDTSAKTQNLNNGMRDSSAIQRATMRPYQVGDKWYYPTKVDLGEKFDGIA
HHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCEECCCCEECCCCCCCCCHHHHHH
SWYGPNFHAKKTSNGEIYNMYAHTAAHKTLPMNTIVKVINVENNLSTIVRINDRGPFVSD
HHCCCCCCCCCCCCCCEEEEEEHHHHCCCCCHHHHHEEEECCCCCEEEEEECCCCCCCCC
RIIDLSNAAARDIDMVKKGTASVRLIILGFSGVISKQYEQSFNANSSKILHKEFRVGESE
CEEECCCHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHCCCCCHHHHHHHHHCCCCC
KSVSGGKFSLQMGAFRNQMGAKTLVDKLQIESRNYSVKVAFKEGLYKVLIQGFQSEEEAR
CCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHH
DFMKQYNQNAVLTRE
HHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9252185 [H]