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The map label for this gene is ISHa1675 tnpB [C]

Identifier: 109948037

GI number: 109948037

Start: 1342387

End: 1343670

Strand: Reverse

Name: ISHa1675 tnpB [C]

Synonym: Hac_1550

Alternate gene names: 109948037

Gene position: 1343670-1342387 (Counterclockwise)

Preceding gene: 109948039

Following gene: 109948036

Centisome position: 86.47

GC content: 35.36

Gene sequence:

>1284_bases
TTGCTTAACGCTATTAAGTTTAGAATTTATCCTAACGCCCAACAAAAAGAGCTTATTTCTAAACATTTTGGCTGTTCTAG
AGTGGTGTATAACTACTTTTTAGATTACCGACAAAAGCAATATGCAAAAGGCATTAAAGAAACTTACTTCACCATGCAAA
AAGTCTTAACCCAAATCAAACGGCAAGAAAAATACCATTACCTCAATGAGTGCAATTCTCAAAGCTTGCAAATGGCGTTA
AGACAGCTTGTGAGTGCTTATGATAATTTCTTTAGCAAAAGAGCGAGATACCCTAAATTCAAATCCAAGAAAAACGCTAA
GCAATCTTTTGCAATCCCCCAAAACATAGAAATCAAAACAGAAACTCAAACAATCGCTCTCCCTAAATTCAAAGAGGGCA
TTAAGGCTAAATTACACAGAGAATTGCCTAAAGATAGCGTTATCAAACAGGCTTTTATTTCTTGCATAGCCGATCAATAT
TTTTGTTCTATATCCTATGAAACCAAAGAGTCTATCCCTAAACCTACCATCATTAAAAAAGCGGTAGGTTTAGACATGGG
CTTAAGAACGCTCATTGTTACAAGCGATAAAATAGAATACCCACACATTCGTTTTTATCAAAAATTAGAAAAGAAACTCA
AACAAGCGCAAAGGAGGTTAAGTAAAAAAGTAAAAGGCTCAAACAACAGGAAAAAACAAGCTAAAAAGGTAGCCAGATTG
CATTTAGCTTGTTCAAACACTAGAGATGACTACTTGCATAAAATCAGTAATGAGATAACCAATCAATACGATTTGATAGG
GGTAGAAACTTTGAATGTTAAAGGTCTTATGAAAACCTATCATTCTAAAAGCCTTGCTAATGCGAGTTGGGGGAAATTCC
TTACTATGTTAGAATACAAAACCCAAAGAAAAAGGAAAACCCTATTAGGCATAGACAGATTTTTCCCTAGCTCTCAATTA
TGTTCTTATTGTGGGTTCAATACAGGCAAAAAATATGAAAGGATTACCCAATTCACTTGTCCTAATTGTAAGATCACACA
CCACAGAGATTACAATGCGAGTGTCAATATTAGAAACTACGCTTTAGGCATGCTAGATGACAGGCATAAAATAAAGATAG
ATAAAAGTAGGGTAGGGATTATCCGAACTGATTACGCTCATCACACTAATGAGCGTATCAAAGCTTGTGGAGCTTCCTCT
AATGGGGTTAGTTCTAAATATGGCAACATATTAGATCTAGCTAGTTATGGAGCTATGAAGCAAGAAAAAGCCCAATCGCT
TTAG

Upstream 100 bases:

>100_bases
ACCCCCTTAATGGGTAATGGTTTTTTCTCATTCCTCTATCCCTATTCATTATTTATAAAAACATTGTATAATAATACAAG
ATAAAAACAAGGGAGTCGTT

Downstream 100 bases:

>100_bases
CGGTTGGGTAATTCACCTAAGGTGTATTCTGACAAAATCCAGCTTAATTTTCAATAAGTTATTGCAACAGAGACAATTAT
TAAAAGAAAGGAAAACGCAT

Product: ISHa1675 transposase B

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMAL
RQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKTETQTIALPKFKEGIKAKLHRELPKDSVIKQAFISCIADQY
FCSISYETKESIPKPTIIKKAVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLKQAQRRLSKKVKGSNNRKKQAKKVARL
HLACSNTRDDYLHKISNEITNQYDLIGVETLNVKGLMKTYHSKSLANASWGKFLTMLEYKTQRKRKTLLGIDRFFPSSQL
CSYCGFNTGKKYERITQFTCPNCKITHHRDYNASVNIRNYALGMLDDRHKIKIDKSRVGIIRTDYAHHTNERIKACGASS
NGVSSKYGNILDLASYGAMKQEKAQSL

Sequences:

>Translated_427_residues
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMAL
RQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKTETQTIALPKFKEGIKAKLHRELPKDSVIKQAFISCIADQY
FCSISYETKESIPKPTIIKKAVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLKQAQRRLSKKVKGSNNRKKQAKKVARL
HLACSNTRDDYLHKISNEITNQYDLIGVETLNVKGLMKTYHSKSLANASWGKFLTMLEYKTQRKRKTLLGIDRFFPSSQL
CSYCGFNTGKKYERITQFTCPNCKITHHRDYNASVNIRNYALGMLDDRHKIKIDKSRVGIIRTDYAHHTNERIKACGASS
NGVSSKYGNILDLASYGAMKQEKAQSL
>Mature_427_residues
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIKRQEKYHYLNECNSQSLQMAL
RQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKTETQTIALPKFKEGIKAKLHRELPKDSVIKQAFISCIADQY
FCSISYETKESIPKPTIIKKAVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLKQAQRRLSKKVKGSNNRKKQAKKVARL
HLACSNTRDDYLHKISNEITNQYDLIGVETLNVKGLMKTYHSKSLANASWGKFLTMLEYKTQRKRKTLLGIDRFFPSSQL
CSYCGFNTGKKYERITQFTCPNCKITHHRDYNASVNIRNYALGMLDDRHKIKIDKSRVGIIRTDYAHHTNERIKACGASS
NGVSSKYGNILDLASYGAMKQEKAQSL

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=352, Percent_Identity=30.9659090909091, Blast_Score=161, Evalue=9e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 49587; Mature: 49587

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIK
CCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQEKYHYLNECNSQSLQMALRQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCEEEE
ETQTIALPKFKEGIKAKLHRELPKDSVIKQAFISCIADQYFCSISYETKESIPKPTIIKK
CCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECHHHHCCCCCHHHHH
AVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLKQAQRRLSKKVKGSNNRKKQAKKVARL
HHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HLACSNTRDDYLHKISNEITNQYDLIGVETLNVKGLMKTYHSKSLANASWGKFLTMLEYK
HHHHCCCHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TQRKRKTLLGIDRFFPSSQLCSYCGFNTGKKYERITQFTCPNCKITHHRDYNASVNIRNY
HHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEEHHE
ALGMLDDRHKIKIDKSRVGIIRTDYAHHTNERIKACGASSNGVSSKYGNILDLASYGAMK
EECCCCCCCEEEEECCCCCEEEECHHHCCHHHHHHCCCCCCCCCHHCCCHHHHHHHCCHH
QEKAQSL
HHHHHCC
>Mature Secondary Structure
MLNAIKFRIYPNAQQKELISKHFGCSRVVYNYFLDYRQKQYAKGIKETYFTMQKVLTQIK
CCCCEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQEKYHYLNECNSQSLQMALRQLVSAYDNFFSKRARYPKFKSKKNAKQSFAIPQNIEIKT
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCEEEE
ETQTIALPKFKEGIKAKLHRELPKDSVIKQAFISCIADQYFCSISYETKESIPKPTIIKK
CCCEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEECHHHHCCCCCHHHHH
AVGLDMGLRTLIVTSDKIEYPHIRFYQKLEKKLKQAQRRLSKKVKGSNNRKKQAKKVARL
HHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
HLACSNTRDDYLHKISNEITNQYDLIGVETLNVKGLMKTYHSKSLANASWGKFLTMLEYK
HHHHCCCHHHHHHHHHHHHCCCEEEEEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHH
TQRKRKTLLGIDRFFPSSQLCSYCGFNTGKKYERITQFTCPNCKITHHRDYNASVNIRNY
HHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEECCCCCCEEEEHHE
ALGMLDDRHKIKIDKSRVGIIRTDYAHHTNERIKACGASSNGVSSKYGNILDLASYGAMK
EECCCCCCCEEEEECCCCCEEEECHHHCCHHHHHHCCCCCCCCCHHCCCHHHHHHHCCHH
QEKAQSL
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]