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The map label for this gene is rpsT

Identifier: 109948017

GI number: 109948017

Start: 1330132

End: 1330401

Strand: Reverse

Name: rpsT

Synonym: Hac_1528

Alternate gene names: 109948017

Gene position: 1330401-1330132 (Counterclockwise)

Preceding gene: 109948027

Following gene: 109948016

Centisome position: 85.62

GC content: 37.78

Gene sequence:

>270_bases
ATGGCAAATCATAAGTCCGCAGAAAAACGAATCAGACAGACCATTAAAAGAACCGAAAGAAATAGGTTCTATAAAACCAA
AATTAAAAATATCATTAAAGCCGTGCGTGAAGCGGTCGCTGTCAATGATGTCGAAAAAGCTCAAGAGCGTTTGAAGATCG
CTAATAAGGAGTTGCATAAATTTGTCAGCAAGGGTATTTTAAAGAAAAACACCGCTTCTAGGAAAGTTTCAAGGCTTAAC
GCTTCAGTGAAAAAAATCGCTCTCGCTTAG

Upstream 100 bases:

>100_bases
AAATTTTCATCGTTATTAAAAGACCTTTTAAACTATTTTTAATCAATTTTTAGATAGGATTATGCCAAATTTTACATTAC
AAAGGGATTAAAACAAGGCT

Downstream 100 bases:

>100_bases
TTTGAAGGGTGGTTTAACTCCTTTAGCTCATAATGAAATTTTATTATTGGGCTTCTTTTTAAGTTTTGCGTTTTTTAGGT
TGTTGCATCTTTTTTTTTAA

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVEKAQERLKIANKELHKFVSKGILKKNTASRKVSRLN
ASVKKIALA

Sequences:

>Translated_89_residues
MANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVEKAQERLKIANKELHKFVSKGILKKNTASRKVSRLN
ASVKKIALA
>Mature_88_residues
ANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVEKAQERLKIANKELHKFVSKGILKKNTASRKVSRLNA
SVKKIALA

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_HELAH (Q17VT0)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_665245.1
- ProteinModelPortal:   Q17VT0
- SMR:   Q17VT0
- STRING:   Q17VT0
- GeneID:   4177159
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_1528
- NMPDR:   fig|382638.8.peg.1480
- eggNOG:   COG0268
- HOGENOM:   HBG734145
- OMA:   RTQMRGA
- ProtClustDB:   PRK00239
- BioCyc:   HACI382638:HAC_1528-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231
- TIGRFAMs:   TIGR00029

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 10254; Mature: 10123

Theoretical pI: Translated: 11.81; Mature: 11.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVEKAQERLKIANKELHK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSKGILKKNTASRKVSRLNASVKKIALA
HHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANHKSAEKRIRQTIKRTERNRFYKTKIKNIIKAVREAVAVNDVEKAQERLKIANKELHK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVSKGILKKNTASRKVSRLNASVKKIALA
HHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA