| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is res [H]
Identifier: 109947918
GI number: 109947918
Start: 1228253
End: 1231192
Strand: Reverse
Name: res [H]
Synonym: Hac_1418
Alternate gene names: 109947918
Gene position: 1231192-1228253 (Counterclockwise)
Preceding gene: 109947919
Following gene: 109947917
Centisome position: 79.23
GC content: 36.19
Gene sequence:
>2940_bases ATGATTTTTGAAAAGCAAGACTACCAGCAAGAGTGTATCAACAACATTATCACGCTTTTAAATGGCTTTGATTTTAAGCA CCACAATGCTTTAGTTCTCAAAGATTGTGTGAGTAAATTCTATGCCACACACGAAATTCCTGTCAAAAATTTAAGCGGCA AGCTTAATGTTGATATTCTAATGGAGACAGGCACAGGCAAAACTTTTACTTATTTGAATCTGATCTTTGCACTCCACAAG GCTTACAAGCAAAATAAATTCATCATCTTTGTTCCACGCAAAGCCATTTTAGAATCAGTTAAGCAAAATATCCGCCTTAC GAAAGATTATTTTCACTTAGAATTCAAACGCCACCTAAAAACCTACACTTATGAAGGGGCTAAATCGCAAAGCAATATCA TTAACCACTACATTAAAAACCAAGATGAACTGAGTGTCTTGCTTCTTACTAACAGCGCAATTGATAAGGGTGCAAACATA CTCAACAAAAACAGCGAAAACCTTTTTAACACCAAAAGCATTTTTGAAAATATCGCTGGGTTAAAGCCTATTTCTATCAT AGACGAGCCGCATCTGCTTAAAGGTGAAGCGTTTAGTAAGTATTTTAGTAAAATAGGAGCGCTTTATTTTCGCTTTGGGG CGACTTTTGCTAAAGAAAAAGAGCATGCTTTAAGCAATGTTGCCTTTTGTTTAGACTCAATTAGCGCGTTTAGAAATTAC CTTGTCAAACAAATTAAAGTCCATTCTATCGTGCAAGATTCTCAAGCTCCGTTTTTGCTCAATGCGGATCAAAAAAGTGC AAAAATTGCCTTTTATAAAGCAGGCATTCTTAAACAAAGCGCCGTTTTAAAGGGAGAGGATTTAGGCAAGATTGACGCTC AATTTAGTGGCATTAGTTTGGTTAAAAGCACCAAAGACAAGGCTTATTTGAGCGATGGCACTACGCTTGAAAAGGCAAGT TCTTATAAACTCGTACAAGATGAAATCAGCACCCTTTTAGAAAAAGCCATTGACTTGCATTTTGAAAAAGAGAAATTTTT GTTTAGCCAAAACATTAAACCGTTAAGCTTGTTTTTTATCCCACGAATTGAGGATTTTAGGCAAATTGAGGGAAAAGGCA CGCCCTTTATAAAAACCGAATTTGAAAGGCTTTACAAACTCAAACGCGCTTCAATTCTAGCAAAGGCGGATTTATCGCCA AGCTATAAAGAGTATTTGGAAAGAGACTTTGATGAGAGCGGTAATTTACGCGTTTATCAGGGCTATTTTAGCGGCGATAG CATAGCGCTTAATAAGTGCAAAAAAGAAAGCAATAGAGAAAACATTGAAGCGAACGACATTAAAATGATTTTAAGCGAGA AAGAAAAGTTGCTTTCACTCCAAACGCCTTTGCGTTTTATTTTTAGCGTGTGGGCTTTACAAGAGGGTTGGGATAATCCA AACATTTTTACCCTTACCAAACTGGCAAGCTCCACAAGCGAAACGAGCCGTCATCAGCAAGTGGGACGGGGGCTAAGAAT TGCTGTAAATAATGAGGGTAAGCGCGTTACGCATGGATTTTTAAATGCAAATGATAGCGCTTTTTATGAGATAAACTACC TTGATATGCTAGTGAGTGGCGAGGAAGTGGGCTTTATAGAGGGTTTGCAAAAAGAGATTGAAGCGAGTAGTTTTATAAGC GGTGGCAGTGTTCTAGACAGAGAAAATTTAGCCAATTTAGGGCTTAATGACAGAGAGATAAATAAACTTTGCATTAAATT AGAAGATTTAAACGCCCTAGAATTTGACGAAAACAGCAACACCTACAAAATCATTGCGCCCATTTATGAAACGATGCAAA ACAACGAAAACATAAAAAGCTTTTTAGGCGAGAAATTTAGCACCGTTTTAAGCGCGTTTAAAATGGCTGAAAATGCAACC AATAAGCACGATCAAGTTATAAACGCTAACCAACCTCAAGAAAAAGTTAAAATCCGCCAAGATTTAGCTAAGGAATTTAA AGAGTTGTGGCAAACCATCAACATGCAAGCCAATCTAATCTATCAAAATATCCAAAAAACCGCGCTAATAGAAACGATCG CCAAAGCGTTTAATAAAAACCATGTTAGGCGTGAGGTAATCACTGTTGAAAGCAAAAGGTATGATGCAAAAACGAATCAA ATTATCACAGAAGAATCAAGCGTCTTAAAAGAGAAAAACTATACTAACGCCTTACAAAAAGAGATAAACGCCCTTTTATT GGACTTTGCCAAAGACGAACGATTGCCTTTAAAATTCATTCTTGAACTTTACAACGCCTTAAACAAAGAGCATTTTAAAA ACTCACCCAAAAAAGCCTTTGATTTGCTTAAAAATATCATTAAAGACGAGTTGCATGCAAATTTGCTTTCTTGCGTGAGT TATGAATTTTGCCAAAACGCCTTTTCAAACATGGCTTTTGACACAACAGATCCGCTTTATTTTAAAGATGGCTCACCCAA AACTGAGATTGAAAAACACAAAATAGGCAAATACAAAAGCGAGCAAACTCCAAGCCAAAATTATCTTTATGAGACGATCA TTTATGATTCTAAAATTGAAGAAGAAGTGAGCAAAGAAAAAGCGCTAAAAATAGAAAACAAAAGCATAGAAGTTTTTGCC AAACTTCCTAAATTTAAAATCCCAACACCTTATAAAAACTATGAGCCAGATTTTGCTTATTTGCTTAAAGACAATAAGGG CGAAAAAATCTTTTTTGTTTGCGAAACCAAAGGTTATGAAAACGAAAGCCGCATCCCACAAGATGAAAAGCGTAAAATTG ACTACGCTAAGAAATTTTTTGAAACGCTATCTGACCATTTGAAAGATGCACAAATAAAAGTCATCTTTGCCACACGCATC AGCAAACAAAATTTATTGAGCGCACTTAACAACGCATTAAAGGATCGCAATGATAGATAA
Upstream 100 bases:
>100_bases GAATTTGATTATGATGGGATCAAAATAAGCTCTAAAAAGGGGCTTTGAGTGGCGTCTTTACAAATTTTGACTGAGACGCT TACAAAAGAGCAAAACACCA
Downstream 100 bases:
>100_bases AAATAAAGCCAACCAAATGGGTATCCCTACTATCCAAAGCCAGCAAGAAAATAATGCCCTTTTTGACACCCTTAAAACGC GCTTCCCAGAGACGATAAAA
Product: type III restriction enzyme R protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 979; Mature: 979
Protein sequence:
>979_residues MIFEKQDYQQECINNIITLLNGFDFKHHNALVLKDCVSKFYATHEIPVKNLSGKLNVDILMETGTGKTFTYLNLIFALHK AYKQNKFIIFVPRKAILESVKQNIRLTKDYFHLEFKRHLKTYTYEGAKSQSNIINHYIKNQDELSVLLLTNSAIDKGANI LNKNSENLFNTKSIFENIAGLKPISIIDEPHLLKGEAFSKYFSKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNY LVKQIKVHSIVQDSQAPFLLNADQKSAKIAFYKAGILKQSAVLKGEDLGKIDAQFSGISLVKSTKDKAYLSDGTTLEKAS SYKLVQDEISTLLEKAIDLHFEKEKFLFSQNIKPLSLFFIPRIEDFRQIEGKGTPFIKTEFERLYKLKRASILAKADLSP SYKEYLERDFDESGNLRVYQGYFSGDSIALNKCKKESNRENIEANDIKMILSEKEKLLSLQTPLRFIFSVWALQEGWDNP NIFTLTKLASSTSETSRHQQVGRGLRIAVNNEGKRVTHGFLNANDSAFYEINYLDMLVSGEEVGFIEGLQKEIEASSFIS GGSVLDRENLANLGLNDREINKLCIKLEDLNALEFDENSNTYKIIAPIYETMQNNENIKSFLGEKFSTVLSAFKMAENAT NKHDQVINANQPQEKVKIRQDLAKEFKELWQTINMQANLIYQNIQKTALIETIAKAFNKNHVRREVITVESKRYDAKTNQ IITEESSVLKEKNYTNALQKEINALLLDFAKDERLPLKFILELYNALNKEHFKNSPKKAFDLLKNIIKDELHANLLSCVS YEFCQNAFSNMAFDTTDPLYFKDGSPKTEIEKHKIGKYKSEQTPSQNYLYETIIYDSKIEEEVSKEKALKIENKSIEVFA KLPKFKIPTPYKNYEPDFAYLLKDNKGEKIFFVCETKGYENESRIPQDEKRKIDYAKKFFETLSDHLKDAQIKVIFATRI SKQNLLSALNNALKDRNDR
Sequences:
>Translated_979_residues MIFEKQDYQQECINNIITLLNGFDFKHHNALVLKDCVSKFYATHEIPVKNLSGKLNVDILMETGTGKTFTYLNLIFALHK AYKQNKFIIFVPRKAILESVKQNIRLTKDYFHLEFKRHLKTYTYEGAKSQSNIINHYIKNQDELSVLLLTNSAIDKGANI LNKNSENLFNTKSIFENIAGLKPISIIDEPHLLKGEAFSKYFSKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNY LVKQIKVHSIVQDSQAPFLLNADQKSAKIAFYKAGILKQSAVLKGEDLGKIDAQFSGISLVKSTKDKAYLSDGTTLEKAS SYKLVQDEISTLLEKAIDLHFEKEKFLFSQNIKPLSLFFIPRIEDFRQIEGKGTPFIKTEFERLYKLKRASILAKADLSP SYKEYLERDFDESGNLRVYQGYFSGDSIALNKCKKESNRENIEANDIKMILSEKEKLLSLQTPLRFIFSVWALQEGWDNP NIFTLTKLASSTSETSRHQQVGRGLRIAVNNEGKRVTHGFLNANDSAFYEINYLDMLVSGEEVGFIEGLQKEIEASSFIS GGSVLDRENLANLGLNDREINKLCIKLEDLNALEFDENSNTYKIIAPIYETMQNNENIKSFLGEKFSTVLSAFKMAENAT NKHDQVINANQPQEKVKIRQDLAKEFKELWQTINMQANLIYQNIQKTALIETIAKAFNKNHVRREVITVESKRYDAKTNQ IITEESSVLKEKNYTNALQKEINALLLDFAKDERLPLKFILELYNALNKEHFKNSPKKAFDLLKNIIKDELHANLLSCVS YEFCQNAFSNMAFDTTDPLYFKDGSPKTEIEKHKIGKYKSEQTPSQNYLYETIIYDSKIEEEVSKEKALKIENKSIEVFA KLPKFKIPTPYKNYEPDFAYLLKDNKGEKIFFVCETKGYENESRIPQDEKRKIDYAKKFFETLSDHLKDAQIKVIFATRI SKQNLLSALNNALKDRNDR >Mature_979_residues MIFEKQDYQQECINNIITLLNGFDFKHHNALVLKDCVSKFYATHEIPVKNLSGKLNVDILMETGTGKTFTYLNLIFALHK AYKQNKFIIFVPRKAILESVKQNIRLTKDYFHLEFKRHLKTYTYEGAKSQSNIINHYIKNQDELSVLLLTNSAIDKGANI LNKNSENLFNTKSIFENIAGLKPISIIDEPHLLKGEAFSKYFSKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNY LVKQIKVHSIVQDSQAPFLLNADQKSAKIAFYKAGILKQSAVLKGEDLGKIDAQFSGISLVKSTKDKAYLSDGTTLEKAS SYKLVQDEISTLLEKAIDLHFEKEKFLFSQNIKPLSLFFIPRIEDFRQIEGKGTPFIKTEFERLYKLKRASILAKADLSP SYKEYLERDFDESGNLRVYQGYFSGDSIALNKCKKESNRENIEANDIKMILSEKEKLLSLQTPLRFIFSVWALQEGWDNP NIFTLTKLASSTSETSRHQQVGRGLRIAVNNEGKRVTHGFLNANDSAFYEINYLDMLVSGEEVGFIEGLQKEIEASSFIS GGSVLDRENLANLGLNDREINKLCIKLEDLNALEFDENSNTYKIIAPIYETMQNNENIKSFLGEKFSTVLSAFKMAENAT NKHDQVINANQPQEKVKIRQDLAKEFKELWQTINMQANLIYQNIQKTALIETIAKAFNKNHVRREVITVESKRYDAKTNQ IITEESSVLKEKNYTNALQKEINALLLDFAKDERLPLKFILELYNALNKEHFKNSPKKAFDLLKNIIKDELHANLLSCVS YEFCQNAFSNMAFDTTDPLYFKDGSPKTEIEKHKIGKYKSEQTPSQNYLYETIIYDSKIEEEVSKEKALKIENKSIEVFA KLPKFKIPTPYKNYEPDFAYLLKDNKGEKIFFVCETKGYENESRIPQDEKRKIDYAKKFFETLSDHLKDAQIKVIFATRI SKQNLLSALNNALKDRNDR
Specific function: This protein cuts the DNA outside of the recognition site. May also act as a helicase involved in unwinding DNA at the cleavage site. Protein only required for restriction but needs the presence of the modification enzyme [H]
COG id: COG3587
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 VRR-NUC domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006935 - InterPro: IPR014883 [H]
Pfam domain/function: PF04851 ResIII; PF08774 VRR_NUC [H]
EC number: =3.1.21.5 [H]
Molecular weight: Translated: 112530; Mature: 112530
Theoretical pI: Translated: 8.90; Mature: 8.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIFEKQDYQQECINNIITLLNGFDFKHHNALVLKDCVSKFYATHEIPVKNLSGKLNVDIL CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCEEEEEE METGTGKTFTYLNLIFALHKAYKQNKFIIFVPRKAILESVKQNIRLTKDYFHLEFKRHLK EECCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCEEHHHHHHHHHHHHHH TYTYEGAKSQSNIINHYIKNQDELSVLLLTNSAIDKGANILNKNSENLFNTKSIFENIAG HHCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHCCHHHCCCCCCHHHHHHHHHHHCC LKPISIIDEPHLLKGEAFSKYFSKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNY CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVKQIKVHSIVQDSQAPFLLNADQKSAKIAFYKAGILKQSAVLKGEDLGKIDAQFSGISL HHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHH VKSTKDKAYLSDGTTLEKASSYKLVQDEISTLLEKAIDLHFEKEKFLFSQNIKPLSLFFI HHHCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEE PRIEDFRQIEGKGTPFIKTEFERLYKLKRASILAKADLSPSYKEYLERDFDESGNLRVYQ CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEE GYFSGDSIALNKCKKESNRENIEANDIKMILSEKEKLLSLQTPLRFIFSVWALQEGWDNP EEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NIFTLTKLASSTSETSRHQQVGRGLRIAVNNEGKRVTHGFLNANDSAFYEINYLDMLVSG CEEEEEHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEECC EEVGFIEGLQKEIEASSFISGGSVLDRENLANLGLNDREINKLCIKLEDLNALEFDENSN CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHEEEECCCCEEECCCCC TYKIIAPIYETMQNNENIKSFLGEKFSTVLSAFKMAENATNKHDQVINANQPQEKVKIRQ EEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH DLAKEFKELWQTINMQANLIYQNIQKTALIETIAKAFNKNHVRREVITVESKRYDAKTNQ HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEECCCCCCHHCC IITEESSVLKEKNYTNALQKEINALLLDFAKDERLPLKFILELYNALNKEHFKNSPKKAF EECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCHHHHH DLLKNIIKDELHANLLSCVSYEFCQNAFSNMAFDTTDPLYFKDGSPKTEIEKHKIGKYKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHCCCCCC EQTPSQNYLYETIIYDSKIEEEVSKEKALKIENKSIEVFAKLPKFKIPTPYKNYEPDFAY CCCCCCCCEEHHHHCCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCCCCCEEE LLKDNKGEKIFFVCETKGYENESRIPQDEKRKIDYAKKFFETLSDHLKDAQIKVIFATRI EEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC SKQNLLSALNNALKDRNDR CHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MIFEKQDYQQECINNIITLLNGFDFKHHNALVLKDCVSKFYATHEIPVKNLSGKLNVDIL CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHCCCCCEEEEEE METGTGKTFTYLNLIFALHKAYKQNKFIIFVPRKAILESVKQNIRLTKDYFHLEFKRHLK EECCCCCHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHHHHCEEHHHHHHHHHHHHHH TYTYEGAKSQSNIINHYIKNQDELSVLLLTNSAIDKGANILNKNSENLFNTKSIFENIAG HHCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHCCHHHCCCCCCHHHHHHHHHHHCC LKPISIIDEPHLLKGEAFSKYFSKIGALYFRFGATFAKEKEHALSNVAFCLDSISAFRNY CCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LVKQIKVHSIVQDSQAPFLLNADQKSAKIAFYKAGILKQSAVLKGEDLGKIDAQFSGISL HHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCCCHHH VKSTKDKAYLSDGTTLEKASSYKLVQDEISTLLEKAIDLHFEKEKFLFSQNIKPLSLFFI HHHCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEE PRIEDFRQIEGKGTPFIKTEFERLYKLKRASILAKADLSPSYKEYLERDFDESGNLRVYQ CCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEE GYFSGDSIALNKCKKESNRENIEANDIKMILSEKEKLLSLQTPLRFIFSVWALQEGWDNP EEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NIFTLTKLASSTSETSRHQQVGRGLRIAVNNEGKRVTHGFLNANDSAFYEINYLDMLVSG CEEEEEHHHHCCHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCEEEEEEEEEEEECC EEVGFIEGLQKEIEASSFISGGSVLDRENLANLGLNDREINKLCIKLEDLNALEFDENSN CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHEEEECCCCEEECCCCC TYKIIAPIYETMQNNENIKSFLGEKFSTVLSAFKMAENATNKHDQVINANQPQEKVKIRQ EEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH DLAKEFKELWQTINMQANLIYQNIQKTALIETIAKAFNKNHVRREVITVESKRYDAKTNQ HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEECCCCCCHHCC IITEESSVLKEKNYTNALQKEINALLLDFAKDERLPLKFILELYNALNKEHFKNSPKKAF EECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHCCCHHHHH DLLKNIIKDELHANLLSCVSYEFCQNAFSNMAFDTTDPLYFKDGSPKTEIEKHKIGKYKS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCHHHHHHCCCCCC EQTPSQNYLYETIIYDSKIEEEVSKEKALKIENKSIEVFAKLPKFKIPTPYKNYEPDFAY CCCCCCCCEEHHHHCCCHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCCCCCCCCCEEE LLKDNKGEKIFFVCETKGYENESRIPQDEKRKIDYAKKFFETLSDHLKDAQIKVIFATRI EEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECC SKQNLLSALNNALKDRNDR CHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10217496; 1587478 [H]