| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is fragment 1
Identifier: 109947199
GI number: 109947199
Start: 542287
End: 542610
Strand: Reverse
Name: fragment 1
Synonym: Hac_0618
Alternate gene names: NA
Gene position: 542610-542287 (Counterclockwise)
Preceding gene: 109947210
Following gene: 109947198
Centisome position: 34.92
GC content: 40.43
Gene sequence:
>324_bases ATGGCTCAATTAGAAGATTTGAAAGTGCATGAAAAATACAATTTGTTGTTATGCATGGTTTCAGGTGCATACAAAGGGAC AATTCCAGGAAATAAGAATTTTAAAGAGTGGTGTGATGAATGCACTTTGACCGGTTTTCGCCCAAGAAGGGGAGAAGTGG CTCAATATGAGCATTTTGAACTCATGCGTAAGGCAGATTATGTTATTGGCATTGTGAATGAGGATTCAACCACTAGAGGG GCTGAAGTCCAACGGAGCGTTTTTGCCCTAAAAATTGACCATGACACTATTGGAACTGATGAAGAAAGGGGCGTTAATGG TTGA
Upstream 100 bases:
>100_bases CACTCTCTTTTTAACCAACACAATCTTTTTAGAAAATTTAATTCAATAAGCCCCATTTTTATCAGTGGGACTTACAGAGT TAAATCACAAGGAGAAAACG
Downstream 100 bases:
>100_bases GGGCGTTTGCGCTCAAAAAGGGAGTCAAGAATACGAAGAATTAGTCAATAAAAGCACATGGCATTTTACGCACAGCACCA GACTTGGAAAACCAAAATCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MAQLEDLKVHEKYNLLLCMVSGAYKGTIPGNKNFKEWCDECTLTGFRPRRGEVAQYEHFELMRKADYVIGIVNEDSTTRG AEVQRSVFALKIDHDTIGTDEERGVNG
Sequences:
>Translated_107_residues MAQLEDLKVHEKYNLLLCMVSGAYKGTIPGNKNFKEWCDECTLTGFRPRRGEVAQYEHFELMRKADYVIGIVNEDSTTRG AEVQRSVFALKIDHDTIGTDEERGVNG >Mature_106_residues AQLEDLKVHEKYNLLLCMVSGAYKGTIPGNKNFKEWCDECTLTGFRPRRGEVAQYEHFELMRKADYVIGIVNEDSTTRGA EVQRSVFALKIDHDTIGTDEERGVNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12156; Mature: 12025
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQLEDLKVHEKYNLLLCMVSGAYKGTIPGNKNFKEWCDECTLTGFRPRRGEVAQYEHFE CCCCCCCEECCCCEEEEEEECCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHH LMRKADYVIGIVNEDSTTRGAEVQRSVFALKIDHDTIGTDEERGVNG HHHHCCEEEEEECCCCCCCCCCEECEEEEEEECCCCCCCCCCCCCCC >Mature Secondary Structure AQLEDLKVHEKYNLLLCMVSGAYKGTIPGNKNFKEWCDECTLTGFRPRRGEVAQYEHFE CCCCCCEECCCCEEEEEEECCCEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHH LMRKADYVIGIVNEDSTTRGAEVQRSVFALKIDHDTIGTDEERGVNG HHHHCCEEEEEECCCCCCCCCCEECEEEEEEECCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA