| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
Click here to switch to the map view.
The map label for this gene is 109946979
Identifier: 109946979
GI number: 109946979
Start: 316521
End: 317321
Strand: Direct
Name: 109946979
Synonym: Hac_0371
Alternate gene names: NA
Gene position: 316521-317321 (Clockwise)
Preceding gene: 109946978
Following gene: 109946980
Centisome position: 20.37
GC content: 38.33
Gene sequence:
>801_bases ATGTCAGAAAAAGAAAGATTGGATGAAGTGGTTTTAGAAGAGGAAAATAATGGAGGTGGCACTAAAAAGGTGTTTTTGAT TGTGGCGATAGCCATTATCATTTTAGCGGTGCTTTTAATGGTGTTTTGGAAAAGCACTAGAGTCGCTCCCAAAGAGACTT TTTTACAAACCGATAGCGGGATGCAAAAAATAGGCAACACGAAAGATGAGAAAAAAGACGATGGGTTTGAAAGCATGAAT ATGGAACCTTCCAAACAAGAATCCACGCTAGACAAAGTGGCAGATGATGTTAAAAAGCAAGAAGATAATGCGTTTAACAT GCCTGTTCAAACCAATCAAGCTCAAACAGAGATGAAAGCCCTAGAAGACGCTAAAAAAGAGTTGGATTTTGTTGAGCACA CTCCTATGGTGGCTCAAAAAGAATCTCAAGTTGCGGCTAAAAAAGAGGTCTCTAACAAGAAGCCTAAAGTAACGCCTAAA AATAAAGAAGCCAGTAAAGATAAAGCTAAACATATAGCTAAAAAAGAGTCTAAAGTCAAAAAAGAAGCCCATAAAGAAAC TTCCAAAAAGACTAAAAAAGTTAATGCTACTAAAATGCATTATTTACAGGTGGGAGTTTTTGCACACACGCCCAACAAAG CGTTTTTGCAAGCGTTCAACCAGTTCTCTCATAAGATTGAAGACAGGGGGGCTACTAAACGCTATCTTATAGGTCCTTAT AAGAGCAAGCAAGAAGCCTTAATGCATGCAGAGGAAGTCAGCAAGAAAGTGGCTAAACCTGTTGTCGTAGAATTGCGTTA A
Upstream 100 bases:
>100_bases TAAGGAATTTAATATTTTAGCTTTACCTTATGAAGTGTTTGCAAAAGAGCGAGGAAGCTCTTGGGCGAAGCATTTATAAC AATTTTTGAAAGGATTTTTG
Downstream 100 bases:
>100_bases AGGCTTTTGCAAACTTAAAAGAGTTATCTCTCTTTTAAGTTTATTTTTTAAAAACTCCCTAGATTTTTTTACAAAGAAAC TCCCCATTATTGTTGCAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 266; Mature: 265
Protein sequence:
>266_residues MSEKERLDEVVLEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDGFESMN MEPSKQESTLDKVADDVKKQEDNAFNMPVQTNQAQTEMKALEDAKKELDFVEHTPMVAQKESQVAAKKEVSNKKPKVTPK NKEASKDKAKHIAKKESKVKKEAHKETSKKTKKVNATKMHYLQVGVFAHTPNKAFLQAFNQFSHKIEDRGATKRYLIGPY KSKQEALMHAEEVSKKVAKPVVVELR
Sequences:
>Translated_266_residues MSEKERLDEVVLEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDGFESMN MEPSKQESTLDKVADDVKKQEDNAFNMPVQTNQAQTEMKALEDAKKELDFVEHTPMVAQKESQVAAKKEVSNKKPKVTPK NKEASKDKAKHIAKKESKVKKEAHKETSKKTKKVNATKMHYLQVGVFAHTPNKAFLQAFNQFSHKIEDRGATKRYLIGPY KSKQEALMHAEEVSKKVAKPVVVELR >Mature_265_residues SEKERLDEVVLEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDGFESMNM EPSKQESTLDKVADDVKKQEDNAFNMPVQTNQAQTEMKALEDAKKELDFVEHTPMVAQKESQVAAKKEVSNKKPKVTPKN KEASKDKAKHIAKKESKVKKEAHKETSKKTKKVNATKMHYLQVGVFAHTPNKAFLQAFNQFSHKIEDRGATKRYLIGPYK SKQEALMHAEEVSKKVAKPVVVELR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30056; Mature: 29925
Theoretical pI: Translated: 10.15; Mature: 10.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKERLDEVVLEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH MQKIGNTKDEKKDDGFESMNMEPSKQESTLDKVADDVKKQEDNAFNMPVQTNQAQTEMKA HHHHCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LEDAKKELDFVEHTPMVAQKESQVAAKKEVSNKKPKVTPKNKEASKDKAKHIAKKESKVK HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH KEAHKETSKKTKKVNATKMHYLQVGVFAHTPNKAFLQAFNQFSHKIEDRGATKRYLIGPY HHHHHHHHHHHHHCCHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCC KSKQEALMHAEEVSKKVAKPVVVELR CCHHHHHHHHHHHHHHHHCCEEEECC >Mature Secondary Structure SEKERLDEVVLEEENNGGGTKKVFLIVAIAIIILAVLLMVFWKSTRVAPKETFLQTDSG CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHH MQKIGNTKDEKKDDGFESMNMEPSKQESTLDKVADDVKKQEDNAFNMPVQTNQAQTEMKA HHHHCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH LEDAKKELDFVEHTPMVAQKESQVAAKKEVSNKKPKVTPKNKEASKDKAKHIAKKESKVK HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH KEAHKETSKKTKKVNATKMHYLQVGVFAHTPNKAFLQAFNQFSHKIEDRGATKRYLIGPY HHHHHHHHHHHHHCCHHHHHHHEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEECCC KSKQEALMHAEEVSKKVAKPVVVELR CCHHHHHHHHHHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA