| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is tagE [C]
Identifier: 109946911
GI number: 109946911
Start: 251007
End: 251942
Strand: Direct
Name: tagE [C]
Synonym: Hac_0297
Alternate gene names: 109946911
Gene position: 251007-251942 (Clockwise)
Preceding gene: 109946910
Following gene: 109946912
Centisome position: 16.15
GC content: 39.64
Gene sequence:
>936_bases GTGTTTTTAGACAGGCGTTTGATTGTGATGGTTACGGACTCTAAAGGGAGTCGTTATATCAATGTGCATATACTATTCCG TCAAATTGGCTTGTATGCACTTTTGAGCGTTGTGGGTTCTTTGTTGTTTTTGGGTATTTCGTTATTGGTTTTGAATAAAG AAATTAAAAATATTGACCAACAGCATGCCCTAATCACTAAAGAATTTGAGAAAAAAAAAGAGACTAACGAAAAGCTTTCT TTGCAAATGGATGAATTTTTAGATGATCTGCAACTTTCAGGGGAGCGCATCAACGATTTAGAAGAAGTGGTGGGGGTGAA TAAACCTGAAGAAAAAGAAGAGGGGGATTTATCAAGCCGCTTGGATGTCGCTGGGATTACCGGACTTCAAAAAAGCTTTA TCATGCGCCTTATCCCTAATGACTACCCACTAGAATCGTATCGGCGTGTTTCAGCGAATTTTAGTAAAAGGATCCACCCT ATTTTGCATGTGTTGCATAACCATACTGGGCTTGATTTAAGCACCGCTATTAACACCCCTGTGTATGCGAGCGCAAGTGG GGTAGTGGGATTAGCCAATAAGGGGTGGAATGGGGGGTATGGGAATTTGATTAAAATATTCCATCCTTTTGGTTTCAAAA CCTACTACGCCCATTTGAATAAAATCGCTGTTAAAACAGGCGAATTTGTCAAAAAAGGGCAGTTGATTGGGTATAGTGGT AATACAGGAATGAGCACAGGACCGCATTTGCATTATGAAGTGCGGTTTTTGAATCAGCCCATAAACCCTATGAGTTTCAC CAAATGGAACATGAAAGATTTTGAAGAAGTTTTCAATAAAGAAAGGAGCATCAGATGGCAATCTTTGATAACAATCATAA ATCGGTTAATGCAAAAACGGGACCAGCGACCATCATCGCTCAAGGCACAAAAATAA
Upstream 100 bases:
>100_bases AATTTATTGAATGGAAGAATTTGTTTTGGGTTTTAGAAGATATTATCCAGCTCCAAGAGCATGTGGATAGAGACGCGTTA GTAAGCCGGTAAGGATTTTG
Downstream 100 bases:
>100_bases AAGGTGAGCTTTATCTTGAATGCCATTTGCACATAGATGGTGAATTGGAAGGGGTGGTGCATTCTAAAGGCACGGTGGTG ATTGGGCAAACCGGCTTGAT
Product: toxR-activated gene
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 311
Protein sequence:
>311_residues MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNKEIKNIDQQHALITKEFEKKKETNEKLS LQMDEFLDDLQLSGERINDLEEVVGVNKPEEKEEGDLSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSANFSKRIHP ILHVLHNHTGLDLSTAINTPVYASASGVVGLANKGWNGGYGNLIKIFHPFGFKTYYAHLNKIAVKTGEFVKKGQLIGYSG NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKDFEEVFNKERSIRWQSLITIINRLMQKRDQRPSSLKAQK
Sequences:
>Translated_311_residues MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNKEIKNIDQQHALITKEFEKKKETNEKLS LQMDEFLDDLQLSGERINDLEEVVGVNKPEEKEEGDLSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSANFSKRIHP ILHVLHNHTGLDLSTAINTPVYASASGVVGLANKGWNGGYGNLIKIFHPFGFKTYYAHLNKIAVKTGEFVKKGQLIGYSG NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKDFEEVFNKERSIRWQSLITIINRLMQKRDQRPSSLKAQK >Mature_311_residues MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNKEIKNIDQQHALITKEFEKKKETNEKLS LQMDEFLDDLQLSGERINDLEEVVGVNKPEEKEEGDLSSRLDVAGITGLQKSFIMRLIPNDYPLESYRRVSANFSKRIHP ILHVLHNHTGLDLSTAINTPVYASASGVVGLANKGWNGGYGNLIKIFHPFGFKTYYAHLNKIAVKTGEFVKKGQLIGYSG NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKDFEEVFNKERSIRWQSLITIINRLMQKRDQRPSSLKAQK
Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M23B family [H]
Homologues:
Organism=Escherichia coli, GI87081989, Length=140, Percent_Identity=40, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=35.7142857142857, Blast_Score=62, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011055 - InterPro: IPR007340 - InterPro: IPR016047 - InterPro: IPR002886 [H]
Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 35479; Mature: 35479
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNKEIKNIDQ CCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH QHALITKEFEKKKETNEKLSLQMDEFLDDLQLSGERINDLEEVVGVNKPEEKEEGDLSSR HHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHC LDVAGITGLQKSFIMRLIPNDYPLESYRRVSANFSKRIHPILHVLHNHTGLDLSTAINTP CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCC VYASASGVVGLANKGWNGGYGNLIKIFHPFGFKTYYAHLNKIAVKTGEFVKKGQLIGYSG CEECCCCCEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECC NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKDFEEVFNKERSIRWQSLITIINRLMQKR CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DQRPSSLKAQK CCCCCCCCCCC >Mature Secondary Structure MFLDRRLIVMVTDSKGSRYINVHILFRQIGLYALLSVVGSLLFLGISLLVLNKEIKNIDQ CCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH QHALITKEFEKKKETNEKLSLQMDEFLDDLQLSGERINDLEEVVGVNKPEEKEEGDLSSR HHHHHHHHHHHHHHCCHHHHEEHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCHHHC LDVAGITGLQKSFIMRLIPNDYPLESYRRVSANFSKRIHPILHVLHNHTGLDLSTAINTP CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCC VYASASGVVGLANKGWNGGYGNLIKIFHPFGFKTYYAHLNKIAVKTGEFVKKGQLIGYSG CEECCCCCEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECC NTGMSTGPHLHYEVRFLNQPINPMSFTKWNMKDFEEVFNKERSIRWQSLITIINRLMQKR CCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DQRPSSLKAQK CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]