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The map label for this gene is yhhG [C]

Identifier: 109946884

GI number: 109946884

Start: 221012

End: 221458

Strand: Reverse

Name: yhhG [C]

Synonym: Hac_0267

Alternate gene names: 109946884

Gene position: 221458-221012 (Counterclockwise)

Preceding gene: 109946888

Following gene: 109946883

Centisome position: 14.25

GC content: 40.04

Gene sequence:

>447_bases
ATGGACACAAACAATAAAGACGATTCAATCATCCGCTTTTCGGTTTCTTTACAACAAAATTTATTGGACGAATTAGACAA
CCGCATCATTAAAAACGGCTATTCTTCTCGCTCAGAATTGGTGCGCGATTTGATCAGAGAAAAGTTAGTAGAAGACAATT
GGATAGAAGATAGCCCTGATGATAAGAGCAAGGTTGCCGTGCTAGTGGTGATTTATGACCACCACCAAAGGGAATTAAAC
CAACGCATGATAGATATTCAGCATGCCAGTGAAACGCATGTTTTATGCACCACGCACATTCATATGGATTCGCATAATTG
CTTAGAAACGATCATTTTAAAAGGCAGTTCTGCAGAAGTCCAACGCTTGCAATTAGAAATTGGGGGGCTTAGGGGGGTTA
AGTTTGCTAAATTGACTAAGGCGTCTAGTTTTGAAAGCAATGAGTAG

Upstream 100 bases:

>100_bases
TTCTCGCATTAAGATTAAACTAATTCAATAAGAGTATTATAACAAAGTATTATAAAAGAATTTTTTAATATAAAATTTAT
GCAAAAAAAGGATTTTTTCA

Downstream 100 bases:

>100_bases
CCATATAACATGCCAAAAGAATTAGCGCTCTATGGAGGGAGTTTTGACCCCTTACACAAGGCTCATTTAGCCATTATTGA
GCAAACTTTAGAATTATTAC

Product: nickel responsive regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MDTNNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDLIREKLVEDNWIEDSPDDKSKVAVLVVIYDHHQRELN
QRMIDIQHASETHVLCTTHIHMDSHNCLETIILKGSSAEVQRLQLEIGGLRGVKFAKLTKASSFESNE

Sequences:

>Translated_148_residues
MDTNNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDLIREKLVEDNWIEDSPDDKSKVAVLVVIYDHHQRELN
QRMIDIQHASETHVLCTTHIHMDSHNCLETIILKGSSAEVQRLQLEIGGLRGVKFAKLTKASSFESNE
>Mature_148_residues
MDTNNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDLIREKLVEDNWIEDSPDDKSKVAVLVVIYDHHQRELN
QRMIDIQHASETHVLCTTHIHMDSHNCLETIILKGSSAEVQRLQLEIGGLRGVKFAKLTKASSFESNE

Specific function: Transcriptional regulator (Potential)

COG id: COG0864

COG function: function code K; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory CopG/NikR family

Homologues:

Organism=Escherichia coli, GI1789892, Length=108, Percent_Identity=31.4814814814815, Blast_Score=67, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NIKR_HELAH (Q17Z13)

Other databases:

- EMBL:   AM260522
- RefSeq:   YP_664112.1
- ProteinModelPortal:   Q17Z13
- SMR:   Q17Z13
- STRING:   Q17Z13
- GeneID:   4176315
- GenomeReviews:   AM260522_GR
- KEGG:   hac:Hac_0267
- NMPDR:   fig|382638.8.peg.258
- eggNOG:   COG0864
- HOGENOM:   HBG646378
- OMA:   HIQHENH
- PhylomeDB:   Q17Z13
- ProtClustDB:   PRK00630
- BioCyc:   HACI382638:HAC_0267-MONOMER
- GO:   GO:0006350
- HAMAP:   MF_00476
- InterPro:   IPR013321
- InterPro:   IPR002145
- InterPro:   IPR022988
- InterPro:   IPR010985
- InterPro:   IPR014864
- Gene3D:   G3DSA:1.10.1220.10
- Gene3D:   G3DSA:3.30.70.1150

Pfam domain/function: PF08753 NikR_C; PF01402 RHH_1; SSF47598 Met_repress_like

EC number: NA

Molecular weight: Translated: 16984; Mature: 16984

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTNNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDLIREKLVEDNWIEDSPD
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
DKSKVAVLVVIYDHHQRELNQRMIDIQHASETHVLCTTHIHMDSHNCLETIILKGSSAEV
CCCCEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCHHHHHHHEECCCCHHH
QRLQLEIGGLRGVKFAKLTKASSFESNE
HHHHHHHCCCCCCHHHHHHCCCCCCCCC
>Mature Secondary Structure
MDTNNKDDSIIRFSVSLQQNLLDELDNRIIKNGYSSRSELVRDLIREKLVEDNWIEDSPD
CCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCC
DKSKVAVLVVIYDHHQRELNQRMIDIQHASETHVLCTTHIHMDSHNCLETIILKGSSAEV
CCCCEEEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCHHHHHHHEECCCCHHH
QRLQLEIGGLRGVKFAKLTKASSFESNE
HHHHHHHCCCCCCHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA