| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is fragment 1
Identifier: 109946823
GI number: 109946823
Start: 169378
End: 171972
Strand: Direct
Name: fragment 1
Synonym: Hac_0201
Alternate gene names: NA
Gene position: 169378-171972 (Clockwise)
Preceding gene: 109946822
Following gene: 109946824
Centisome position: 10.9
GC content: 37.57
Gene sequence:
>2595_bases ATGCTAAAAGAGTATTTAGAAAGCATTAAAGACATCACGCCCGAAAAGAATGAACACACGCACCGCCTTTTTTTATACAA CTTGCTTGAGGGCTTAAAAGACAATTTCAATAAAGAATTTAAGATTGAGCATGAGCCTAAAAGAGACAAACAAGGGGGTC AGCCTGATTTTCGCATTTCTTTTCAAGGGCTTAACATTGGCTATGTAGAAAACAAAAGAGCAGGGACCAAACTTAACGAA CTCTTAAAAAGCGATCAGGTCCTCAAATACTTAGAGCTAAACCAAAATCTCATGCTCACGGATTACCTTAATTTCATGTG GGTGGGAAAAGATGAAAATAACAAGCCTTGGATTAAAAAAGAAATCTCTATCGCCAGCCTTGATGAACTCTCTAAACCCC TAAAAACTGAACGCGATCTCATTGAATTTTTTAGAGGCTTTTTCAACTACGAACCAGTGCCTATCGCTAACGCCAAAGAT TTTGCAACGCATTTAAGCACACCCACCAAGTATTTAAAAGACGCTTTAATCGCATACCAAGAAGACGCACAAGTTTCTAG CATTTTTAACAATTTTAAAGAATATCTTTATGAAGAATTGAGTTTTGAAGACTTTAGCGATGCGTTCGCTCAAACGCTCA CCTACAGCCTTTTTCTAGCCAAACTCAACCACCCTTTTGAAAAAATAAATTTGGATAATGTGAGAAGCTCCATTCCTAAA AATTTCGCTGTGATCAGAGAAATGGCGGATTTTTTAAAGAAACTTGATGGAATCAAAGAAATCCAATGGCTTTTAGATGA AATTTTAATCTTGATCAACCATGTTGATATGGACTCTATCGTTAAAGATTTGAGTGAGGATAAAGACCCTTATTTGCACT TTTATGAAACCTTTTTAAGCGCTTATGACCCTGAATTGCGAGAGAAAAAGGGCGTGTATTACACTCCGGATTCTGTGGTG AAATTCATCATTAACGCTTTAGATAGTTTGCTTAAAACGCATTTTAAAGACGCTCCCTTAGGCTTAAAAAGCGCTTTAGA TAACGAAAATATCAAGCTCTTAGATTTTGCTACCGGCACCGGCACTTTTTTATTGGAAGCGTTCAGGAAAGCACTAGAAA TGAGAAAAACAAGCGATGGAGGCATCTCCACTAAAGAGGACAAATACCAAAACCTCTTGAAGCAATTTTATGGGTTTGAA TACTTGATCGCTCCTTATGCGATCGCTCATTTGAATCTCTATCAAGCCTTTAAGGAGGAATTTAAAAAGCCTCTCAAAGA AAACGATGCACTCAAAATCGTTTTAACTAACACTCTCATACAGCCTAGTGAGATCGCCGCTTATCGTGGGCTAAACCCAA TTTTTGAAGAAGAGCTTTTAAACGCTCAAGAGATTAAGAAAGATGAAAAGATCCTTATCATCACCGGCAATCCCCCTTAT AGCGGAGCGAGCAGCAATAAGGGCTTGTTTGAATGGGAAGTGAAAGCCACTTACGGCATAGAGCCTGAATTTCAAACCAT AGAAATTGAAAAAAATGTTAAACTCACCGACAAAATCCAAACGCTTTTAAACAGCATTCAAACCCAAAAACAAAGCGGCA GCAAAAACGCTCTCAAAACCCTTAAAAAATTTCATTCCAAATACAAACTAAAAAATGAGAAAAACCCTAAAGGGCTTTTA GATGATTATGTGAAATTCATGCGTTTCGCCCAAAACAAGATCGAATCATTGGGGTATGGTCTCTTTGGCTTTATCTCTAA CAACAGCTTTTTAAATAACCCTACTTTTAGGGGGTTAAGGCGCTCTCTTTTAGAATGTTATGATGAGCTTTATATTCTCA ATTTGCATGGAGATGCGAGGAAAAAGGAGCTAACCCCACAAGGCGCAAAAGATGAAAATGTTTTCAATATCATGCAAGGG GTGTCCATTAACCTTTTTGTCAAAAACCCACAAGCCACCAAGCAAAAAATCTATTATTATGATGTGTATGGCGAAAGGGC TGAAAAATACGCCTTTTTAGCCCAACATGATTTGGATAGTATTAATTGGCTTGAGCTTACCCCAAGAGAGCCTTTTTGCT TACTCATACCCCAAAAAATGCACTTTTTAGATGAGTATGAACAAGGGTTTAGTGTTCAGGAGATGTTTCAAATCTCAAGT GTGGGGATTGTTACAGGAAAAGATAAAATTTTTATTGCCAACAGCACCAAAAGTTTAAAAGAGCAAGTCTTAAAATATTG TAACGAGTTTAACGAACAATGCGTTAAGGACATTCACTATCGTCCTTTTGATATTCGTAAAGTTTATTACGACACCAAAA AATTAGGAAGAGCGAGGGAAAATACATTTAAACACATGTTACCCCCCCCAACAGATCCTAAAACACCCAATCAAACACGC AAAAATATCGCGCTAAACACCCCACGACAACTAAAAAACAACGATAAAAATTGGACGCAATGTTTGATAAGCTCTCACAT TAACGATCAAGGTTTAAGCTCTGGGGCAATGGAAGTGGGGTTAATTACCCCCTTTATCAATTCCAAGACCCCAACTACAC CGAAAATTTTACGCCAGAGTTTAGAAACTTTATAG
Upstream 100 bases:
>100_bases GGCGTAGATGCCATTAGCGTAGGGGCTTTAATCCATCAAGCCACTTTTATTGACATGCACATGAAAATGGCTTGAAAACT TTGAAAAAGGGGTTATTAGT
Downstream 100 bases:
>100_bases ACAAGCGCTATAACCATTATTTTGAGCCACTAGAGATTTTAGGCTATATTTATGCGTTATTGTATTCCCCAAACTACCGC AAGCGTTATGAAGATTTTCT
Product: adenine specific DNA methyltransferase fragment 1
Products: NA
Alternate protein names: Helicase/Methyltransferase; Superfamily II DNA/RNA Helicase; DNA Methyltransferase; N-6 DNA Methylase; Helicase; D12 Class N6 Adenine-Specific DNA Methyltransferase; Type III Restriction Protein Res Subunit; N-6 DNA Methylase Family; II DNA/RNA Helicase; Helicase-Like Protein; Site-Specific DNA-Methyltransferase; Endonuclease And Methylase LlaGI; Restriction- System LlaBIII; Helicase Domain-Containing Protein
Number of amino acids: Translated: 864; Mature: 864
Protein sequence:
>864_residues MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRISFQGLNIGYVENKRAGTKLNE LLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKKEISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKD FATHLSTPTKYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLSAYDPELREKKGVYYTPDSVV KFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFE YLIAPYAIAHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKTLKKFHSKYKLKNEKNPKGLL DDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLRRSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQG VSINLFVKNPQATKQKIYYYDVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARENTFKHMLPPPTDPKTPNQTR KNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVGLITPFINSKTPTTPKILRQSLETL
Sequences:
>Translated_864_residues MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRISFQGLNIGYVENKRAGTKLNE LLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKKEISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKD FATHLSTPTKYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLSAYDPELREKKGVYYTPDSVV KFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFE YLIAPYAIAHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKTLKKFHSKYKLKNEKNPKGLL DDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLRRSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQG VSINLFVKNPQATKQKIYYYDVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARENTFKHMLPPPTDPKTPNQTR KNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVGLITPFINSKTPTTPKILRQSLETL >Mature_864_residues MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRISFQGLNIGYVENKRAGTKLNE LLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKKEISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKD FATHLSTPTKYLKDALIAYQEDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLSAYDPELREKKGVYYTPDSVV KFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGTGTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFE YLIAPYAIAHLNLYQAFKEEFKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKTLKKFHSKYKLKNEKNPKGLL DDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLRRSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQG VSINLFVKNPQATKQKIYYYDVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARENTFKHMLPPPTDPKTPNQTR KNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVGLITPFINSKTPTTPKILRQSLETL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 100153; Mature: 100153
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRIS CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEE FQGLNIGYVENKRAGTKLNELLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKK EECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCHHH EISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKDFATHLSTPTKYLKDALIAYQ HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH EDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCH NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHH AYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGT HCCCHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCC GTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLYQAFKEE HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY HHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCHHHCCCCCEEEEEECCCCC SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKT CCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH LKKFHSKYKLKNEKNPKGLLDDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLR HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH RSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQGVSINLFVKNPQATKQKIYYY HHHHHHHHHEEEEEECCCCHHHCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEE DVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS EECCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHH VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARE CEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH NTFKHMLPPPTDPKTPNQTRKNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVG HHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEE LITPFINSKTPTTPKILRQSLETL EEECCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure MLKEYLESIKDITPEKNEHTHRLFLYNLLEGLKDNFNKEFKIEHEPKRDKQGGQPDFRIS CHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCEEEE FQGLNIGYVENKRAGTKLNELLKSDQVLKYLELNQNLMLTDYLNFMWVGKDENNKPWIKK EECCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCHHH EISIASLDELSKPLKTERDLIEFFRGFFNYEPVPIANAKDFATHLSTPTKYLKDALIAYQ HCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHH EDAQVSSIFNNFKEYLYEELSFEDFSDAFAQTLTYSLFLAKLNHPFEKINLDNVRSSIPK CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHCCH NFAVIREMADFLKKLDGIKEIQWLLDEILILINHVDMDSIVKDLSEDKDPYLHFYETFLS HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHH AYDPELREKKGVYYTPDSVVKFIINALDSLLKTHFKDAPLGLKSALDNENIKLLDFATGT HCCCHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCC GTFLLEAFRKALEMRKTSDGGISTKEDKYQNLLKQFYGFEYLIAPYAIAHLNLYQAFKEE HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH FKKPLKENDALKIVLTNTLIQPSEIAAYRGLNPIFEEELLNAQEIKKDEKILIITGNPPY HHHHHCCCCCEEEEEECCCCCHHHHHHHCCCCHHHHHHHCCHHHCCCCCEEEEEECCCCC SGASSNKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLNSIQTQKQSGSKNALKT CCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH LKKFHSKYKLKNEKNPKGLLDDYVKFMRFAQNKIESLGYGLFGFISNNSFLNNPTFRGLR HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH RSLLECYDELYILNLHGDARKKELTPQGAKDENVFNIMQGVSINLFVKNPQATKQKIYYY HHHHHHHHHEEEEEECCCCHHHCCCCCCCCCCHHHHHHCCCEEEEEEECCCCCCCEEEEE DVYGERAEKYAFLAQHDLDSINWLELTPREPFCLLIPQKMHFLDEYEQGFSVQEMFQISS EECCCHHHHHHHHHHCCCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHH VGIVTGKDKIFIANSTKSLKEQVLKYCNEFNEQCVKDIHYRPFDIRKVYYDTKKLGRARE CEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH NTFKHMLPPPTDPKTPNQTRKNIALNTPRQLKNNDKNWTQCLISSHINDQGLSSGAMEVG HHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHCCCCHHHHHHHHHCCCCCCCCCCCEEEE LITPFINSKTPTTPKILRQSLETL EEECCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA