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The map label for this gene is csrA [H]

Identifier: 109946799

GI number: 109946799

Start: 149691

End: 149921

Strand: Reverse

Name: csrA [H]

Synonym: Hac_0176

Alternate gene names: 109946799

Gene position: 149921-149691 (Counterclockwise)

Preceding gene: 109946800

Following gene: 109946798

Centisome position: 9.65

GC content: 41.99

Gene sequence:

>231_bases
ATGCTCATACTCAGCCGCAAAGTTAATGAAGGGATTGTCATTGACGATCACATTCATATTAAAGTCGTTTCCATAGATAG
AGGGAGCGTGCGTTTAGGGTTTGAAGCGCCTGAAAGTACTCTTATCTTGCGCGCTGAACTCAAAGAGGCCATTGTGAGCG
AAAACCAAAAAGCTTCTGCTTCCGTAGATGAAAGCTTGTTAGAAAACATCAAAAAGGTCATTAAGCCTTGA

Upstream 100 bases:

>100_bases
AATCACTAACGCAGAAGGTCTTAGCGTTTTGGATAAAATCAAACAAGGCGATATTATAGAGAGCGTTGAGTTTAGCACCT
CTCTATAAAAAAGATTAAAG

Downstream 100 bases:

>100_bases
CGCATGCTTTTGAAGTTTATCCTAAAGTCAATATTTTTTTAAAAATCCTTTACAAAGAAGGGGCTTATCATAAGCTCATC
TCTCGCATGTGTTTAGTCAA

Product: carbon storage regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MLILSRKVNEGIVIDDHIHIKVVSIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASASVDESLLENIKKVIKP

Sequences:

>Translated_76_residues
MLILSRKVNEGIVIDDHIHIKVVSIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASASVDESLLENIKKVIKP
>Mature_76_residues
MLILSRKVNEGIVIDDHIHIKVVSIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASASVDESLLENIKKVIKP

Specific function: Could accelerate the degradation of some genes transcripts potentially through selective RNA binding [H]

COG id: COG1551

COG function: function code T; Carbon storage regulator (could also regulate swarming and quorum sensing)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CsrA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003751
- ProDom:   PD009007 [H]

Pfam domain/function: PF02599 CsrA [H]

EC number: NA

Molecular weight: Translated: 8405; Mature: 8405

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILSRKVNEGIVIDDHIHIKVVSIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASA
CEEECCCCCCCEEECCCEEEEEEEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCC
SVDESLLENIKKVIKP
HHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLILSRKVNEGIVIDDHIHIKVVSIDRGSVRLGFEAPESTLILRAELKEAIVSENQKASA
CEEECCCCCCCEEECCCEEEEEEEECCCCEEEECCCCCCEEEEHHHHHHHHHCCCCCCCC
SVDESLLENIKKVIKP
HHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA