| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is 109946785
Identifier: 109946785
GI number: 109946785
Start: 138736
End: 140208
Strand: Direct
Name: 109946785
Synonym: Hac_0162
Alternate gene names: NA
Gene position: 138736-140208 (Clockwise)
Preceding gene: 109946784
Following gene: 109946786
Centisome position: 8.93
GC content: 37.68
Gene sequence:
>1473_bases ATGAATTGGCTTAAAGGTTGTAGTTTGAGTGTGTGTGCGTTAATGCTTATTGTAGGGTGTGCGAATAATCCTAGTCATAG CGGATCGTTTGGGTCGTCTAAGGCTAAAAAAGTTAAAAAAATTGAAGATGGTTTTAACAAGTTCGAGCAAGCTTATTATA ATAAAGATTTTAAGAGTGCTCATGAAATTTCACAAAATTTGATTGAGACGGACAAGCATCAGCATGACGCCCTTTTGTGG AAATTGCAAAGTGGGGTGAATGCGTTTGAGATGAATGATTACAAGCAGTCTATCACAAATTTAGAAGATGTGAATACGAG CTTTGACAATAAATTCAAAGACGGGACGACTGTGGGTGGCAAGGTATTGGCTTCTACGGTGGGGAATGAAAAGAATATCC CTTATAAGGGGAATGTGTATGAATGGGTGTTGGCTAATTATTATTTAGCGTTAGATTATGCGTTTTTAAATGATATAGAT AAGGCTAGAGTGTTTTTTAATCAAACGGCTGAGCGCCAAAGAAGAGCCAAAGACTATTTTGCTAAAGAGATCGCACAAGA GCAAGAAGATATCAAAAAACAAGAAAAAGAAGCTAAATCTAAGTCTAAAGGCAAAAAGGAAGTTTCTGCTCAATTTTTAG GTTCTCTTAATAATTTAACAAACAAATACAAAAGCTTGGAATTAATGAAGGGCTATGAAAACTTTTCTAACCCTTTAGTG AATTATGTTTCAGGGATATTCTACCTTTTGAATAACGATAAAGATAAGGCTGAAGGCTATTTGAAAGAAGCGTTTGCAAT CAGCCATGCTAAGGTTGTGGGCGAAGATTTAGCGGGTGTGAATAAAGCAAGGAATGTAAAAACCACTTGGGTGATTGTTG AAGATGGCGAACAGCCTTTATTGGAAGAAGTGGCTGATAAGGACTTGTATTTTGCGATGCCTTATTTGAAAGATGAAGGC AATGGGACTGATTTCAAGCAAAAATATAGCCTTAATGGTAAAGATTTGGAAGTTTTGAGTAACTTTAATGAGGTCATCAA AGCCGAATTCAACCACAAGCTCCCTAGCATCACGGCGAGAGCGGTTAGTGCGGCTGTGACTAAAAACCTTTTATCAAGGG GAGTTGAAGAGGCAGGTAAGGTTACTGAGGCGGCTTCAGGTAGTGCTGCAGGTCAGATGGCTAGCATGGGGTTAAAAATG TTTGGTAAAGCTATGAAAATGGTTAATGCCCATACCACGCAAGCAGATACCAGAAGCTCAAGCGTGTTCCCTAATAAAAT TTATGCCGCTAAATTAAAAGCGAGCGAATTGGGGGTTTTGAACGCTGATGGAATGAAATTATTGGATCTAAATCCTACAA AATGTGAAAAAACAGACGCACAAAATGGTAAAATTTGCAGTAACACTAATAACATTGTGTTTATTAGGACTTTGAAAACA GGAACGAGCGTTTCTATTTTAAACTTAAAGTAG
Upstream 100 bases:
>100_bases GTTTTTTTTTTTTTATAATTTTCAAATGATTAAGATGCGTTTTAATTTTGTTGTTATATAATCAAGCTCAAATTTATTTT ATTTTCAAGGAGTTTTAGCA
Downstream 100 bases:
>100_bases GAGTTTTATTTTATGGCATTACAAACAAAATTAAAAGTTATAGGATCAGTGGTTTTAGGCGCGTTATTGTGGGTGGGCTG TTCAGGGGGAGCAGTGAGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 490; Mature: 490
Protein sequence:
>490_residues MNWLKGCSLSVCALMLIVGCANNPSHSGSFGSSKAKKVKKIEDGFNKFEQAYYNKDFKSAHEISQNLIETDKHQHDALLW KLQSGVNAFEMNDYKQSITNLEDVNTSFDNKFKDGTTVGGKVLASTVGNEKNIPYKGNVYEWVLANYYLALDYAFLNDID KARVFFNQTAERQRRAKDYFAKEIAQEQEDIKKQEKEAKSKSKGKKEVSAQFLGSLNNLTNKYKSLELMKGYENFSNPLV NYVSGIFYLLNNDKDKAEGYLKEAFAISHAKVVGEDLAGVNKARNVKTTWVIVEDGEQPLLEEVADKDLYFAMPYLKDEG NGTDFKQKYSLNGKDLEVLSNFNEVIKAEFNHKLPSITARAVSAAVTKNLLSRGVEEAGKVTEAASGSAAGQMASMGLKM FGKAMKMVNAHTTQADTRSSSVFPNKIYAAKLKASELGVLNADGMKLLDLNPTKCEKTDAQNGKICSNTNNIVFIRTLKT GTSVSILNLK
Sequences:
>Translated_490_residues MNWLKGCSLSVCALMLIVGCANNPSHSGSFGSSKAKKVKKIEDGFNKFEQAYYNKDFKSAHEISQNLIETDKHQHDALLW KLQSGVNAFEMNDYKQSITNLEDVNTSFDNKFKDGTTVGGKVLASTVGNEKNIPYKGNVYEWVLANYYLALDYAFLNDID KARVFFNQTAERQRRAKDYFAKEIAQEQEDIKKQEKEAKSKSKGKKEVSAQFLGSLNNLTNKYKSLELMKGYENFSNPLV NYVSGIFYLLNNDKDKAEGYLKEAFAISHAKVVGEDLAGVNKARNVKTTWVIVEDGEQPLLEEVADKDLYFAMPYLKDEG NGTDFKQKYSLNGKDLEVLSNFNEVIKAEFNHKLPSITARAVSAAVTKNLLSRGVEEAGKVTEAASGSAAGQMASMGLKM FGKAMKMVNAHTTQADTRSSSVFPNKIYAAKLKASELGVLNADGMKLLDLNPTKCEKTDAQNGKICSNTNNIVFIRTLKT GTSVSILNLK >Mature_490_residues MNWLKGCSLSVCALMLIVGCANNPSHSGSFGSSKAKKVKKIEDGFNKFEQAYYNKDFKSAHEISQNLIETDKHQHDALLW KLQSGVNAFEMNDYKQSITNLEDVNTSFDNKFKDGTTVGGKVLASTVGNEKNIPYKGNVYEWVLANYYLALDYAFLNDID KARVFFNQTAERQRRAKDYFAKEIAQEQEDIKKQEKEAKSKSKGKKEVSAQFLGSLNNLTNKYKSLELMKGYENFSNPLV NYVSGIFYLLNNDKDKAEGYLKEAFAISHAKVVGEDLAGVNKARNVKTTWVIVEDGEQPLLEEVADKDLYFAMPYLKDEG NGTDFKQKYSLNGKDLEVLSNFNEVIKAEFNHKLPSITARAVSAAVTKNLLSRGVEEAGKVTEAASGSAAGQMASMGLKM FGKAMKMVNAHTTQADTRSSSVFPNKIYAAKLKASELGVLNADGMKLLDLNPTKCEKTDAQNGKICSNTNNIVFIRTLKT GTSVSILNLK
Specific function: Unknown
COG id: COG3014
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54355; Mature: 54355
Theoretical pI: Translated: 9.16; Mature: 9.16
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNWLKGCSLSVCALMLIVGCANNPSHSGSFGSSKAKKVKKIEDGFNKFEQAYYNKDFKSA CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH HEISQNLIETDKHQHDALLWKLQSGVNAFEMNDYKQSITNLEDVNTSFDNKFKDGTTVGG HHHHHHHHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHCCCCCCCCCCCCCCCCH KVLASTVGNEKNIPYKGNVYEWVLANYYLALDYAFLNDIDKARVFFNQTAERQRRAKDYF HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH AKEIAQEQEDIKKQEKEAKSKSKGKKEVSAQFLGSLNNLTNKYKSLELMKGYENFSNPLV HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYVSGIFYLLNNDKDKAEGYLKEAFAISHAKVVGEDLAGVNKARNVKTTWVIVEDGEQPL HHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEECCCCHH LEEVADKDLYFAMPYLKDEGNGTDFKQKYSLNGKDLEVLSNFNEVIKAEFNHKLPSITAR HHHHCCCCEEEEECCEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH AVSAAVTKNLLSRGVEEAGKVTEAASGSAAGQMASMGLKMFGKAMKMVNAHTTQADTRSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC SVFPNKIYAAKLKASELGVLNADGMKLLDLNPTKCEKTDAQNGKICSNTNNIVFIRTLKT CCCCCHHHHEEECHHHCCEECCCCEEEEECCCCCCCCCCCCCCCEECCCCCEEEEEEECC GTSVSILNLK CCEEEEEECC >Mature Secondary Structure MNWLKGCSLSVCALMLIVGCANNPSHSGSFGSSKAKKVKKIEDGFNKFEQAYYNKDFKSA CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH HEISQNLIETDKHQHDALLWKLQSGVNAFEMNDYKQSITNLEDVNTSFDNKFKDGTTVGG HHHHHHHHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHCCCCCCCCCCCCCCCCH KVLASTVGNEKNIPYKGNVYEWVLANYYLALDYAFLNDIDKARVFFNQTAERQRRAKDYF HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH AKEIAQEQEDIKKQEKEAKSKSKGKKEVSAQFLGSLNNLTNKYKSLELMKGYENFSNPLV HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NYVSGIFYLLNNDKDKAEGYLKEAFAISHAKVVGEDLAGVNKARNVKTTWVIVEDGEQPL HHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEEECCCCHH LEEVADKDLYFAMPYLKDEGNGTDFKQKYSLNGKDLEVLSNFNEVIKAEFNHKLPSITAR HHHHCCCCEEEEECCEECCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH AVSAAVTKNLLSRGVEEAGKVTEAASGSAAGQMASMGLKMFGKAMKMVNAHTTQADTRSS HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC SVFPNKIYAAKLKASELGVLNADGMKLLDLNPTKCEKTDAQNGKICSNTNNIVFIRTLKT CCCCCHHHHEEECHHHCCEECCCCEEEEECCCCCCCCCCCCCCCEECCCCCEEEEEEECC GTSVSILNLK CCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA