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The map label for this gene is secY [H]

Identifier: 109946777

GI number: 109946777

Start: 133149

End: 134411

Strand: Direct

Name: secY [H]

Synonym: Hac_0154

Alternate gene names: 109946777

Gene position: 133149-134411 (Clockwise)

Preceding gene: 109946776

Following gene: 109946778

Centisome position: 8.57

GC content: 40.54

Gene sequence:

>1263_bases
ATGAATAAAGCCATTGCTAGTAAGATACTCATCACTTTGGGTTTTTTATTTCTCTACAGAGTATTAGCTTATATCCCCAT
TCCTGGCGTAGATTTAGCAGCAATCAAGACTTTTTTTGACAGCAATTCCAACAACGCTTTGGGGTTGTTTAACATGTTTA
GTGGGAATGCGGTTTCTCGCTTGAGCATCATTTCTTTGGGTATCATGCCCTATATCACTTCTTCTATCATCATGGAGCTT
TTGAGCGCGACTTTCCCTAACTTGGCTAAAATGAAAAAAGAGCGAGACGGCATGCAAAAATACATGCAAATCGTGCGCTA
TTTAACCATTTTAATCACCTTGATCCAAGCGGTGAGCGTTTCAGTGGGGTTAAGGAGTATTAGCGGAGGAGTGAATGGGG
CGATCATGATTGATATGCAAGTCTTTATGATCGTTTCAGCGTTTTCTATGCTTACAGGAACGATGTTGCTCATGTGGATA
GGGGAGCAAATCACGCAAAGGGGCGTGGGAAATGGGATTAGCCTTATTATTTTTGCTGGGATTGTTTCAGGGATCCCATC
GGCTATTTCAGGCACATTCAATTTAGTTAATACGGGTGTGATTCATATCTTAATGCTCATTGGTATTGTCTTGATTGTTT
TGGCGACTATTTTTGTGATTATCTATGTGGAATTAGCCGAGCGCAGGATCCCTATTTCTTATGCACGTAAAGTGGTGATG
CAAAACCAAAACAAGCGTATCATGAATTACATTCCCATTAAGTTGAATTTAAGCGGAGTGATTCCGCCCATTTTTGCTTC
AGCCTTGTTAGTGTTTCCTTCTACGATTTTACAGCAGGCCACAAGCAACAAAACTTTGCAAGCGATTGCGGATTTCTTAA
GCCCACAAGGGTATGCGTATAATATTTTGATGTTCTTGCTCATCATATTCTTCGCTTATTTTTATTCTTCTATTGTGTTT
AATTCTAAGGATATTGCAGACAATTTGAGGCGTAATGGTGGGTATATTCCAGGGATTAGACCTGGAGAGGGGACTTCATC
GTTTTTAAATTCTGTAGCGAGTAAGCTCACTTTGTGGGGTTCGTTGTATTTAGCGCTCATTTCTACCGTGCCTTGGATTT
TGGTTAAGGCTATGGGCGTGCCTTTTTATTTTGGAGGCACGGCGGTGCTGATTGTGGTTCAAGTCGCTATTGATACCATG
AAAAAGATTGAAGCACAAGTTTATATGAGCAAGTATAAGACTTTAAGTGCGGTGGGCTTTTAA

Upstream 100 bases:

>100_bases
TAAAATTTTGGCTTCTAAAATCAAAGATAAGAGAATTAAAACAAGTGGGCAGAAATAATGCCTCTGTTTTATCAGCTTGA
TTGGAGAGGAATAAGTTATT

Downstream 100 bases:

>100_bases
TGGCGATCTCTATCAAAAGCCCAAAAGAAATCAAAGCGTTAAGAAAAGCTGGGGAATTGACGGCTCAAGCGTTAGCTCTT
TTGGAGCGAGAAGTAAGGCT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKTFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGVNGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVIHILMLIGIVLIVLATIFVIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAIADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGIRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQVYMSKYKTLSAVGF

Sequences:

>Translated_420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKTFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGVNGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVIHILMLIGIVLIVLATIFVIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAIADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGIRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQVYMSKYKTLSAVGF
>Mature_420_residues
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKTFFDSNSNNALGLFNMFSGNAVSRLSIISLGIMPYITSSIIMEL
LSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSVSVGLRSISGGVNGAIMIDMQVFMIVSAFSMLTGTMLLMWI
GEQITQRGVGNGISLIIFAGIVSGIPSAISGTFNLVNTGVIHILMLIGIVLIVLATIFVIIYVELAERRIPISYARKVVM
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAIADFLSPQGYAYNILMFLLIIFFAYFYSSIVF
NSKDIADNLRRNGGYIPGIRPGEGTSSFLNSVASKLTLWGSLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTM
KKIEAQVYMSKYKTLSAVGF

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=418, Percent_Identity=41.1483253588517, Blast_Score=303, Evalue=1e-83,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 45939; Mature: 45939

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKTFFDSNSNNALGLFNMFSGNAVSR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
LSIISLGIMPYITSSIIMELLSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGLRSISGGVNGAIMIDMQVFMIVSAFSMLTGTMLLMWIGEQITQRGVGNGISLIIFAG
HHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IVSGIPSAISGTFNLVNTGVIHILMLIGIVLIVLATIFVIIYVELAERRIPISYARKVVM
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAIADFLSPQGYAY
CCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
NILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGIRPGEGTSSFLNSVASKLTLWG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQVYMSKYKTLSAVGF
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKAIASKILITLGFLFLYRVLAYIPIPGVDLAAIKTFFDSNSNNALGLFNMFSGNAVSR
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCHHHH
LSIISLGIMPYITSSIIMELLSATFPNLAKMKKERDGMQKYMQIVRYLTILITLIQAVSV
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVGLRSISGGVNGAIMIDMQVFMIVSAFSMLTGTMLLMWIGEQITQRGVGNGISLIIFAG
HHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
IVSGIPSAISGTFNLVNTGVIHILMLIGIVLIVLATIFVIIYVELAERRIPISYARKVVM
HHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QNQNKRIMNYIPIKLNLSGVIPPIFASALLVFPSTILQQATSNKTLQAIADFLSPQGYAY
CCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
NILMFLLIIFFAYFYSSIVFNSKDIADNLRRNGGYIPGIRPGEGTSSFLNSVASKLTLWG
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
SLYLALISTVPWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQVYMSKYKTLSAVGF
HHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]