| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is alaS
Identifier: 109946744
GI number: 109946744
Start: 109158
End: 111701
Strand: Reverse
Name: alaS
Synonym: Hac_0121
Alternate gene names: 109946744
Gene position: 111701-109158 (Counterclockwise)
Preceding gene: 109946746
Following gene: 109946743
Centisome position: 7.19
GC content: 40.68
Gene sequence:
>2544_bases ATGGATATTCGCAACGAATTTTTACAATTTTTTAAAAATAAGGGGCATGAGATTTATCCTAGCATGCCCTTAGTACCTAA TGATTCTACCTTGCTTTTTACTAATGCTGGTATGGTGCAATTTAAAGACATTTTTACCGGCATGGTGCCACACCCTAGCA TTCCTAGAGCAACAAGCTCGCAACTATGCATGCGTGCAGGGGGTAAGCATAACGATTTAGAAAATGTCGGTTATACCGCA AGACACCACACGCTTTTTGAAATGCTAGGGAATTTCTCTTTTGGGGATTATTTCAAAGAAGAAGCGATTTTGTTTGCGTG GGAATTTGTAACCAAAAATTTAGGGTTTAAGCCTAAAGATTTGTATATTAGCGTGCATGAGAAAGATGATGAAGCCTTTA AATTATGGGAAAAGTTTGTGCCTACTGATAAAATCAAAAAAATGGGCGATAAAGATAATTTCTGGCAAATGGGTGATAGC GGGCCTTGCGGGCCTTGCAGTGAAATTTATATTGATCAAGGCGAAAAACACTTTAAGGGGAGTGAGGATTATTTTGGGGG CGAGGGCGATAGGTTTTTAGAAATTTGGAATTTGGTGTTCATGCAATACGAACGCTCTAATGATGGCATTTTATCCCCCT TGCCAAAGCCTAGCATTGATACAGGCATGGGGCTAGAAAGGGTGCAAGCGCTCTTAGAACATAAGCTCAATAATTTTGAT TCTTCATTATTTGTGCCTTTAATGAAAGAGATCAGCGAACTTACAAGCCTAGATTATGCGAGCGAGTTCCAGCCAAGCTT TAGGGTAGTGGCCGATCATGCAAGGGCGGTGGCGTTTTTGCTCGCTCAAGGGGTGCATTTCAATAAAGAGGGTCGTGGCT ATGTTTTAAGGCGTATTTTAAGGCGCTCTTTAAGGCATGGGTATTTAATGGGCTTGAAAGAAGCGTTTCTATACAGAGTC GTGGGCGTGGTGTGCGAGCAATTTGCCGACACGCATGCGTATTTGAAAGAGTCTAAAGAAATGGTGATGAAAGAGTGCTT TGAAGAAGAAAAACGCTTTTTAGAGACTTTAGAATCTGGCATGGAATTATTTAATTTGTCTTTAAAACATTTGAATGACA ATAAAATCTTTGATGGGAAAATCGCTTTCAAGCTTTATGATACTTTTGGTTTCCCTTTGGATTTAACGAACGATATGTTA AGAAATCATGGGGCGTGTGTGGATATGCAAGGCTTTGAAAGTTGCATGCAAGAGCAGGTGAAACGCTCTAAAGCCTCATG GAAAGGCAAACGAAACAACGCCGATTTTAGCACCATTTTAAACGCTTATGCACCTAATGTATTTGTGGGGTATGAAACGA CAGAATGTTTTAGCCAAGCGTTAGGGTTTTTTGATAGCGATTTTAAAGAAATGACAGAAACAAATCCTAACCAAGAAGTT TGGGTGTTGTTAGAAAAAACGCCTTTTTATGCAGAAGGTGGGGGGGCTATAGGCGATAGGGGTGCACTTTTAAAAGATGA TGAAGAAGCGGCTTTAGTGCTAGATACAAAAAACTTTTTTGGGCTTAATTTTTCGCTCCTTAAAATCAAAAAAGCGCTAA AAAAAGGCGATCAAGTGATTGCACAAGTGAGCAATGAACGCTTAGAAATTGCTAAACACCATAGTGCGACGCATTTATTA CAGAGTGCGTTAAGAGAAGTTTTAGGCTCGCATGTGAGTCAAGCGGGGAGTTTAGTAGAATCCAAACGATTGCGTTTTGA CTTTTCGCATTCTAAAGCGCTCAATGATGAAGAGTTGGAAAAAGTAGAAGATTTAGTCAATGCTCAAATTTTCAAGCACT TAAGCAGCCAAGTGGAGCATATGCCTTTAAATCAAGCCAAGGATAAGGGGGCGTTAGCGTTGTTTAGTGAAAAATACGCT GAAAATGTGCGGGTGGTGAGCTTTAAAGAAGCGTCCATTGAATTGTGTGGGGGCATTCATGTGGAAAATACTGGGCTTAT TGGGGGGTTTAGGATCCTTAAAGAAAGCGGGGTAAGCAGTGGGGTCAGGCGCATTGAAGCGGTATGTGGGAAAGCCTTTT ACCAATTGGCTAAAGAAGAAAATAAAGAGCTTAAAAACGCTAGGATTTTATTGAAAAATAACGATTTGATAGCCGGCATT AATAAGCTCAAAGAGAGCGTGAAGAATAGCCAAAAAGCATCCGTCCCTATGGATTTGCCGATTGAAACGATTAATGGCAC AAGCGTAGTGGTGGGCGTAGTGGAACAAGGCGATATTAAAGAAATGATTGACCGGTTAAAAAACAAGCATGAAAAATTGC TCGCTATGGTGTTTAAGCAAGAAAATGAGCGCATCAGTCTCGCATGTGGGGTAAAAAATGCCCCTATAAAAGCGCATGTG TGGGCTAATGAAGTGGCGCAAATTTTGGGGGGTAAAGGGGGCGGAAGAGACGATTTTGCGAGTGCTGGAGGTAAGGATAT TGAAAAATTACAAGCAGCACTTAATGCGGCGAAAAATACCGCTTTAAAAGCTTTAGAAAAATAG
Upstream 100 bases:
>100_bases TGGATGTTTAAAGTATAATAAACTATCTTTTTAAAAAACAACTTAAAAGCGCTATAAAATAGTCTTAAAAGGTGCGATAA AACAACAAAAAGGAATACCC
Downstream 100 bases:
>100_bases CATGGAGTTGATTTTAGGCTCTCAATCTAGCTCTAGAGCGAATCTTTTAAAAGAGCATGGCATTCAATTCAAACAAAAAG CGCTGGATTTTGATGAAGAA
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS
Number of amino acids: Translated: 847; Mature: 847
Protein sequence:
>847_residues MDIRNEFLQFFKNKGHEIYPSMPLVPNDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSSQLCMRAGGKHNDLENVGYTA RHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAFKLWEKFVPTDKIKKMGDKDNFWQMGDS GPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNNFD SSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRSLRHGYLMGLKEAFLYRV VGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDML RNHGACVDMQGFESCMQEQVKRSKASWKGKRNNADFSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMTETNPNQEV WVLLEKTPFYAEGGGAIGDRGALLKDDEEAALVLDTKNFFGLNFSLLKIKKALKKGDQVIAQVSNERLEIAKHHSATHLL QSALREVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLNQAKDKGALALFSEKYA ENVRVVSFKEASIELCGGIHVENTGLIGGFRILKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNARILLKNNDLIAGI NKLKESVKNSQKASVPMDLPIETINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQENERISLACGVKNAPIKAHV WANEVAQILGGKGGGRDDFASAGGKDIEKLQAALNAAKNTALKALEK
Sequences:
>Translated_847_residues MDIRNEFLQFFKNKGHEIYPSMPLVPNDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSSQLCMRAGGKHNDLENVGYTA RHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAFKLWEKFVPTDKIKKMGDKDNFWQMGDS GPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNNFD SSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRSLRHGYLMGLKEAFLYRV VGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDML RNHGACVDMQGFESCMQEQVKRSKASWKGKRNNADFSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMTETNPNQEV WVLLEKTPFYAEGGGAIGDRGALLKDDEEAALVLDTKNFFGLNFSLLKIKKALKKGDQVIAQVSNERLEIAKHHSATHLL QSALREVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLNQAKDKGALALFSEKYA ENVRVVSFKEASIELCGGIHVENTGLIGGFRILKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNARILLKNNDLIAGI NKLKESVKNSQKASVPMDLPIETINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQENERISLACGVKNAPIKAHV WANEVAQILGGKGGGRDDFASAGGKDIEKLQAALNAAKNTALKALEK >Mature_847_residues MDIRNEFLQFFKNKGHEIYPSMPLVPNDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSSQLCMRAGGKHNDLENVGYTA RHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAFKLWEKFVPTDKIKKMGDKDNFWQMGDS GPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNNFD SSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRSLRHGYLMGLKEAFLYRV VGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLESGMELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDML RNHGACVDMQGFESCMQEQVKRSKASWKGKRNNADFSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMTETNPNQEV WVLLEKTPFYAEGGGAIGDRGALLKDDEEAALVLDTKNFFGLNFSLLKIKKALKKGDQVIAQVSNERLEIAKHHSATHLL QSALREVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELEKVEDLVNAQIFKHLSSQVEHMPLNQAKDKGALALFSEKYA ENVRVVSFKEASIELCGGIHVENTGLIGGFRILKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNARILLKNNDLIAGI NKLKESVKNSQKASVPMDLPIETINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQENERISLACGVKNAPIKAHV WANEVAQILGGKGGGRDDFASAGGKDIEKLQAALNAAKNTALKALEK
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI109148542, Length=963, Percent_Identity=35.4101765316719, Blast_Score=488, Evalue=1e-137, Organism=Homo sapiens, GI38569417, Length=953, Percent_Identity=32.0041972717734, Blast_Score=403, Evalue=1e-112, Organism=Escherichia coli, GI1789048, Length=860, Percent_Identity=45.5813953488372, Blast_Score=694, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=968, Percent_Identity=33.1611570247934, Blast_Score=460, Evalue=1e-129, Organism=Caenorhabditis elegans, GI17536681, Length=732, Percent_Identity=32.6502732240437, Blast_Score=333, Evalue=2e-91, Organism=Saccharomyces cerevisiae, GI6324911, Length=752, Percent_Identity=40.8244680851064, Blast_Score=502, Evalue=1e-142, Organism=Drosophila melanogaster, GI24582809, Length=962, Percent_Identity=32.8482328482328, Blast_Score=457, Evalue=1e-128, Organism=Drosophila melanogaster, GI45552267, Length=962, Percent_Identity=32.8482328482328, Blast_Score=457, Evalue=1e-128, Organism=Drosophila melanogaster, GI24658214, Length=820, Percent_Identity=28.9024390243902, Blast_Score=284, Evalue=2e-76,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SYA_HELAH (Q17ZF3)
Other databases:
- EMBL: AM260522 - RefSeq: YP_663972.1 - ProteinModelPortal: Q17ZF3 - STRING: Q17ZF3 - GeneID: 4177705 - GenomeReviews: AM260522_GR - KEGG: hac:Hac_0121 - NMPDR: fig|382638.8.peg.118 - eggNOG: COG0013 - HOGENOM: HBG354397 - OMA: VILEMES - PhylomeDB: Q17ZF3 - ProtClustDB: PRK00252 - BioCyc: HACI382638:HAC_0121-MONOMER - GO: GO:0005737 - HAMAP: MF_00036_B - InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR003156 - InterPro: IPR018163 - InterPro: IPR012947 - PRINTS: PR00980 - SMART: SM00863 - TIGRFAMs: TIGR00344
Pfam domain/function: PF02272 DHHA1; PF01411 tRNA-synt_2c; PF07973 tRNA_SAD; SSF101353 Ala-tRNA-synth_IIc_anticod-bd; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.7
Molecular weight: Translated: 95226; Mature: 95226
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA; PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIRNEFLQFFKNKGHEIYPSMPLVPNDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSS CCHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCHH QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD HHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE LYISVHEKDDEAFKLWEKFVPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKG EEEEEECCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCCC SEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNNFD CCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC SSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRIL HHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH RRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLESG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHGACVDMQGFESCMQEQV HHHHHHHHHHCCCCCEECCEEEEEEEECCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHH KRSKASWKGKRNNADFSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMTETNPNQEV HHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEE WVLLEKTPFYAEGGGAIGDRGALLKDDEEAALVLDTKNFFGLNFSLLKIKKALKKGDQVI EEEEECCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH AQVSNERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCHHHHH KVEDLVNAQIFKHLSSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEASIELCGGIH HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHCCEE VENTGLIGGFRILKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNARILLKNNDLIAGI ECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHH NKLKESVKNSQKASVPMDLPIETINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQ HHHHHHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC ENERISLACGVKNAPIKAHVWANEVAQILGGKGGGRDDFASAGGKDIEKLQAALNAAKNT CCCEEEEEECCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH ALKALEK HHHHHCC >Mature Secondary Structure MDIRNEFLQFFKNKGHEIYPSMPLVPNDSTLLFTNAGMVQFKDIFTGMVPHPSIPRATSS CCHHHHHHHHHHCCCCEECCCCCCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCCCCCHH QLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKD HHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCE LYISVHEKDDEAFKLWEKFVPTDKIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKG EEEEEECCCCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCCC SEDYFGGEGDRFLEIWNLVFMQYERSNDGILSPLPKPSIDTGMGLERVQALLEHKLNNFD CCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC SSLFVPLMKEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRIL HHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH RRSLRHGYLMGLKEAFLYRVVGVVCEQFADTHAYLKESKEMVMKECFEEEKRFLETLESG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MELFNLSLKHLNDNKIFDGKIAFKLYDTFGFPLDLTNDMLRNHGACVDMQGFESCMQEQV HHHHHHHHHHCCCCCEECCEEEEEEEECCCCCCCCHHHHHHCCCCEEEHHHHHHHHHHHH KRSKASWKGKRNNADFSTILNAYAPNVFVGYETTECFSQALGFFDSDFKEMTETNPNQEV HHHHHHCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEE WVLLEKTPFYAEGGGAIGDRGALLKDDEEAALVLDTKNFFGLNFSLLKIKKALKKGDQVI EEEEECCCCEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH AQVSNERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHSKALNDEELE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHCCCCHHHHH KVEDLVNAQIFKHLSSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEASIELCGGIH HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCHHHHCCEE VENTGLIGGFRILKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNARILLKNNDLIAGI ECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHH NKLKESVKNSQKASVPMDLPIETINGTSVVVGVVEQGDIKEMIDRLKNKHEKLLAMVFKQ HHHHHHHHCCCCCCCCCCCCCEECCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC ENERISLACGVKNAPIKAHVWANEVAQILGGKGGGRDDFASAGGKDIEKLQAALNAAKNT CCCEEEEEECCCCCCEEEEECHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHH ALKALEK HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA