Click here to switch to the map view.

The map label for this gene is DDEM fragment 3

Identifier: 109946721

GI number: 109946721

Start: 87354

End: 87605

Strand: Reverse

Name: DDEM fragment 3

Synonym: Hac_0092

Alternate gene names: NA

Gene position: 87605-87354 (Counterclockwise)

Preceding gene: 109946722

Following gene: 109946720

Centisome position: 5.64

GC content: 38.49

Gene sequence:

>252_bases
TTGGCGTTTGAAAGCGATTATTTAAACCCTATCCAATCCAATTATCAAGCTTTAATGCGAAAAAATAGCCCTAAATTATA
CAACCATCAAGCCACCAACCACTCACAAGGCGCTTTAGAAAAATTAAAGCTCATTGACAAAGAGCAAGGCAAAGAATGTT
TGCCTAAAAACCTGCATGGCAAACAACAATTTAAAGCACATGGGGCGTTTGAGTTGGAAGAAAATAAGCCCCACCATAGA
CACAAGGTTTGA

Upstream 100 bases:

>100_bases
CATTTTAGTTTTGATTTTAATCTTTTAGAGCCTTCTCAAAGCGTGAGCGTTCAAGAGGCTATAAGCGATTTAGCCTATTT
TCATTCTAATGAGGGGGCGT

Downstream 100 bases:

>100_bases
CACTCCAAACAATGGCACCAACTCCCACTCCGAATTGCACCGCTCTATCACGCCCAGAGAAGCTACTAGGATACAAAGCT
TTAGCCATACTTATATTTTT

Product: cytosine specific DNA methyltransferase fragment 3

Products: S-adenosyl-L-homocysteine; DNA containing 5-methylcytosine

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MAFESDYLNPIQSNYQALMRKNSPKLYNHQATNHSQGALEKLKLIDKEQGKECLPKNLHGKQQFKAHGAFELEENKPHHR
HKV

Sequences:

>Translated_83_residues
MAFESDYLNPIQSNYQALMRKNSPKLYNHQATNHSQGALEKLKLIDKEQGKECLPKNLHGKQQFKAHGAFELEENKPHHR
HKV
>Mature_82_residues
AFESDYLNPIQSNYQALMRKNSPKLYNHQATNHSQGALEKLKLIDKEQGKECLPKNLHGKQQFKAHGAFELEENKPHHRH
KV

Specific function: Unknown

COG id: COG0270

COG function: function code L; Site-specific DNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.1.1.37

Molecular weight: Translated: 9663; Mature: 9532

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFESDYLNPIQSNYQALMRKNSPKLYNHQATNHSQGALEKLKLIDKEQGKECLPKNLHG
CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
KQQFKAHGAFELEENKPHHRHKV
CHHHHCCCCEECCCCCCCCCCCC
>Mature Secondary Structure 
AFESDYLNPIQSNYQALMRKNSPKLYNHQATNHSQGALEKLKLIDKEQGKECLPKNLHG
CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
KQQFKAHGAFELEENKPHHRHKV
CHHHHCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: S-adenosyl-L-methionine; DNA

Specific reaction: S-adenosyl-L-methionine + DNA = S-adenosyl-L-homocysteine + DNA containing 5-methylcytosine

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA