| Definition | Helicobacter acinonychis str. Sheeba chromosome, complete genome. |
|---|---|
| Accession | NC_008229 |
| Length | 1,553,927 |
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The map label for this gene is hypF [H]
Identifier: 109946715
GI number: 109946715
Start: 83142
End: 85394
Strand: Reverse
Name: hypF [H]
Synonym: Hac_0083
Alternate gene names: 109946715
Gene position: 85394-83142 (Counterclockwise)
Preceding gene: 109946716
Following gene: 109946714
Centisome position: 5.5
GC content: 38.48
Gene sequence:
>2253_bases TTGAATAAAATCACGCTTTTTGGCGTGGTTCAAGGCGTGGGCATGCGCCCTTTTATCTATACCCTAGCTCAAAAATTAGA GCTTGTAGGCTTTGTGCGTAACACTCAAGCGGCTTTAGAGATCATCTTACCCACTCAAAAAACAGAATCTTTTTTAAACG CCCTAAAAAAGGAGTTGCCCCCTTTAGCTTTGATTGAAAAAATCATTATTAGCCCTTATGATAAAACGCTCAAATTTAAT GATTTTAGGATTTTAGAAAGCAAAAACCACCCCTTAAATTTGCTCAGTCAAATCCCTAAAGATTTAGGCGTGTGCGATGA TTGCTTGCGTGAGATTAGAGATGAAAGCTCCCCCTATTTCCATTACGCTTTTAATTCTTGTGCAAAATGCGGAGCAAGAT ACAGCCTTTTAAACGCCTTACCCTATGACAGAGAAAACTCTGCCTTAAAACCTTTTAAACTCTGTGAATTTTGCACATTT GTCTATAAAGACACTAATAACAAACGATTCCATATCCAAGGTATAAGCTGCAAAAAGTGCGGTATTGCGATTGACTATAA ACAATTAGAGGATTATGATGCGCTTTTAGAATGCGCTAAAGACATTCAAAAGGGTAAAATCATCGCTCTTAAAGGTCTGG GGGGCTTTGCTTTGGTGTGCGATGCGAGAAACTTTCAGAGCATAGAAAGATTGCGACTTTTAAAAAAGCGCCCCCTAAAG CCTTTCGCGCTCATGTTTAAAGATTTAAACACAGCCAAACAATATGTATTTTTGAATGAATTAGAATGCGAGAGTTTAAG ATCCGCTAACGCCCCCATCCTCTTAGCGCATAAAAAACCTGATACAAAATTAGCCCCCAATATCGCCAAAAACTCCCCCT TTTATGGTGTTATCTTACCCTATACCCCTTTGCATGCTTTATTGTTGGATTTATTGGATTTCCCTATTGTGTTCACGAGC GCGAATTTTAACTCCCTCCCTTTAGCGAGCGATGAAAAAGAGATGGATCGTTTTCATTTTATTTTTGATTTTAAGCTCAC GCACAATCGCACTATCATTCACAGGATTGATGATAGTATCACGCAATATGTGGATAATGCGATTCGCCCCATGCGTTTGG CTAGAGGGTTTGCTCCCCTTTATCTCACTCTCCCTAAACGCTCTACTCATTCGCCCACAAAAATTTTAGCGCTTGGAGCG GAGCAAAAAGGGCATTTTAGTTTATTGGATAGTGAGACTTCTGTTCTTTTACTCTCGCCTTTTTGTGGGGATCTGAGCGT TTTAGAAAATGAAAAACATTTCAAAGAAACCCTGAATTTTTTCTTAAACACTTATAATTTCAAACCCACGCTCTTATCTT GCGATGAGCATAAAAACTACACCACCACTAAAATGGCTTTTGATTTTAACACGCCTTTATTGCAAGTCCAGCACCACCAT GCCCACTTTTTAGCGAGCATGCTAGATGCGTTTTTACAAGACCCCCACTTAAACTATCCTTTTATAGGTATTGTTTGGGA TGGGAGTGGGGCTTATGAAAATAAGATTTATGGGGCGGAGTGTTTTGTGGGGGATTTTAACCAAATTGAAGAAGCGGCTA GGTTTGAAGAATTTTTGCTTTTAGGGGGACAAAAAGCGATTAAAGAACCTAAACGCTTGGTTTTAGAAATCGCTTTAAAA CACCAACTCAACAAGCTTTTAAAACGCATTCAAAAACACTTTAAGGAAGATGAAATAGAAATTTTTAAACAAATGCATGC CAAAGCAATTCAAAGCGTAGCCACCAATTCCATAGGCCGTTTGTTTGATATAGTGGCGTTTAGTTTAGGGGCAGTAGAAA CGATTGGTTTTGAAGCAGAGAGCGGACAGGTTTTAGAAAATTTGGCCCTACAAAGCGAAGAGATCGCCTTTTATCCTTTT AAAATCAAAAATAGCGTGGTGGGTTTGAAAGAATTTTATCAAGCGTTTGAAAAGGATTTGGATATTTTAGAGCCTAAACA TATCGCTAAGAAATTTTTTAATAGCTTAATAGAAATCATTATCGCTTTGATTGCACCTTTTAAAGAGCATGTGGTGGTGT GTAGTGGGGGTGTGTTTTGTAACCAATTATTGTGCGAACAATTAGCCAAACGATTAAAAACACTTCAAAGGAAGTATTTT TTCCACAAACATTTCCCCCCTAACGATAGCAGTATTGCTGTCGGTCAAGCCTTAATGGCGTATTTTAACCCTACAATCAT CAAGAAAGGATAA
Upstream 100 bases:
>100_bases AGATCTTCAAGCAACACACACCCCTAGAAGTGATAGGGGTTGATTGTAATACTTTAATCAAGCAGCATGGAAGTTTGCAT TGTGTAACGATGCAACTTTA
Downstream 100 bases:
>100_bases AAATGGAAAGCGTGACTCTAGCATGCGGGAATGGTGGGAAAGAAACAAACGCTTTAATTGAGCGAGTTTTTATGCCCTAT TTAAAAGAGTTGATCAGTGC
Product: HypF family transcriptional regulator
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 750; Mature: 750
Protein sequence:
>750_residues MNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPTQKTESFLNALKKELPPLALIEKIIISPYDKTLKFN DFRILESKNHPLNLLSQIPKDLGVCDDCLREIRDESSPYFHYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCEFCTF VYKDTNNKRFHIQGISCKKCGIAIDYKQLEDYDALLECAKDIQKGKIIALKGLGGFALVCDARNFQSIERLRLLKKRPLK PFALMFKDLNTAKQYVFLNELECESLRSANAPILLAHKKPDTKLAPNIAKNSPFYGVILPYTPLHALLLDLLDFPIVFTS ANFNSLPLASDEKEMDRFHFIFDFKLTHNRTIIHRIDDSITQYVDNAIRPMRLARGFAPLYLTLPKRSTHSPTKILALGA EQKGHFSLLDSETSVLLLSPFCGDLSVLENEKHFKETLNFFLNTYNFKPTLLSCDEHKNYTTTKMAFDFNTPLLQVQHHH AHFLASMLDAFLQDPHLNYPFIGIVWDGSGAYENKIYGAECFVGDFNQIEEAARFEEFLLLGGQKAIKEPKRLVLEIALK HQLNKLLKRIQKHFKEDEIEIFKQMHAKAIQSVATNSIGRLFDIVAFSLGAVETIGFEAESGQVLENLALQSEEIAFYPF KIKNSVVGLKEFYQAFEKDLDILEPKHIAKKFFNSLIEIIIALIAPFKEHVVVCSGGVFCNQLLCEQLAKRLKTLQRKYF FHKHFPPNDSSIAVGQALMAYFNPTIIKKG
Sequences:
>Translated_750_residues MNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPTQKTESFLNALKKELPPLALIEKIIISPYDKTLKFN DFRILESKNHPLNLLSQIPKDLGVCDDCLREIRDESSPYFHYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCEFCTF VYKDTNNKRFHIQGISCKKCGIAIDYKQLEDYDALLECAKDIQKGKIIALKGLGGFALVCDARNFQSIERLRLLKKRPLK PFALMFKDLNTAKQYVFLNELECESLRSANAPILLAHKKPDTKLAPNIAKNSPFYGVILPYTPLHALLLDLLDFPIVFTS ANFNSLPLASDEKEMDRFHFIFDFKLTHNRTIIHRIDDSITQYVDNAIRPMRLARGFAPLYLTLPKRSTHSPTKILALGA EQKGHFSLLDSETSVLLLSPFCGDLSVLENEKHFKETLNFFLNTYNFKPTLLSCDEHKNYTTTKMAFDFNTPLLQVQHHH AHFLASMLDAFLQDPHLNYPFIGIVWDGSGAYENKIYGAECFVGDFNQIEEAARFEEFLLLGGQKAIKEPKRLVLEIALK HQLNKLLKRIQKHFKEDEIEIFKQMHAKAIQSVATNSIGRLFDIVAFSLGAVETIGFEAESGQVLENLALQSEEIAFYPF KIKNSVVGLKEFYQAFEKDLDILEPKHIAKKFFNSLIEIIIALIAPFKEHVVVCSGGVFCNQLLCEQLAKRLKTLQRKYF FHKHFPPNDSSIAVGQALMAYFNPTIIKKG >Mature_750_residues MNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPTQKTESFLNALKKELPPLALIEKIIISPYDKTLKFN DFRILESKNHPLNLLSQIPKDLGVCDDCLREIRDESSPYFHYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCEFCTF VYKDTNNKRFHIQGISCKKCGIAIDYKQLEDYDALLECAKDIQKGKIIALKGLGGFALVCDARNFQSIERLRLLKKRPLK PFALMFKDLNTAKQYVFLNELECESLRSANAPILLAHKKPDTKLAPNIAKNSPFYGVILPYTPLHALLLDLLDFPIVFTS ANFNSLPLASDEKEMDRFHFIFDFKLTHNRTIIHRIDDSITQYVDNAIRPMRLARGFAPLYLTLPKRSTHSPTKILALGA EQKGHFSLLDSETSVLLLSPFCGDLSVLENEKHFKETLNFFLNTYNFKPTLLSCDEHKNYTTTKMAFDFNTPLLQVQHHH AHFLASMLDAFLQDPHLNYPFIGIVWDGSGAYENKIYGAECFVGDFNQIEEAARFEEFLLLGGQKAIKEPKRLVLEIALK HQLNKLLKRIQKHFKEDEIEIFKQMHAKAIQSVATNSIGRLFDIVAFSLGAVETIGFEAESGQVLENLALQSEEIAFYPF KIKNSVVGLKEFYQAFEKDLDILEPKHIAKKFFNSLIEIIIALIAPFKEHVVVCSGGVFCNQLLCEQLAKRLKTLQRKYF FHKHFPPNDSSIAVGQALMAYFNPTIIKKG
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=755, Percent_Identity=32.1854304635762, Blast_Score=306, Evalue=4e-84,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 85449; Mature: 85449
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPTQKTESFLNALKKELP CCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCC PLALIEKIIISPYDKTLKFNDFRILESKNHPLNLLSQIPKDLGVCDDCLREIRDESSPYF HHHHHHHHHHCCCCCCEEECCEEEEECCCCCHHHHHHCHHHCCHHHHHHHHHHCCCCCEE HYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCEFCTFVYKDTNNKRFHIQGISCKKC EHHHHHHHHHCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC GIAIDYKQLEDYDALLECAKDIQKGKIIALKGLGGFALVCDARNFQSIERLRLLKKRPLK CEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCCC PFALMFKDLNTAKQYVFLNELECESLRSANAPILLAHKKPDTKLAPNIAKNSPFYGVILP HHHHHHHHHHHHHHEEEEECCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECC YTPLHALLLDLLDFPIVFTSANFNSLPLASDEKEMDRFHFIFDFKLTHNRTIIHRIDDSI CCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHCCEEEEEEEEEECCCEEEHHHHHHH TQYVDNAIRPMRLARGFAPLYLTLPKRSTHSPTKILALGAEQKGHFSLLDSETSVLLLSP HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEEEC FCGDLSVLENEKHFKETLNFFLNTYNFKPTLLSCDEHKNYTTTKMAFDFNTPLLQVQHHH CCCCHHHHCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEEEECCCCEEEEHHHH AHFLASMLDAFLQDPHLNYPFIGIVWDGSGAYENKIYGAECFVGDFNQIEEAARFEEFLL HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEECCEEEECCHHHHHHHHHHHHHHH LGGQKAIKEPKRLVLEIALKHQLNKLLKRIQKHFKEDEIEIFKQMHAKAIQSVATNSIGR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LFDIVAFSLGAVETIGFEAESGQVLENLALQSEEIAFYPFKIKNSVVGLKEFYQAFEKDL HHHHHHHHHCCHHHCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC DILEPKHIAKKFFNSLIEIIIALIAPFKEHVVVCSGGVFCNQLLCEQLAKRLKTLQRKYF CCCCHHHHHHHHHHHHHHHHHHHHCCHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH FHKHFPPNDSSIAVGQALMAYFNPTIIKKG HHCCCCCCCCCHHHHHHHHHHHCCEEEECC >Mature Secondary Structure MNKITLFGVVQGVGMRPFIYTLAQKLELVGFVRNTQAALEIILPTQKTESFLNALKKELP CCCEEEEEEHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCC PLALIEKIIISPYDKTLKFNDFRILESKNHPLNLLSQIPKDLGVCDDCLREIRDESSPYF HHHHHHHHHHCCCCCCEEECCEEEEECCCCCHHHHHHCHHHCCHHHHHHHHHHCCCCCEE HYAFNSCAKCGARYSLLNALPYDRENSALKPFKLCEFCTFVYKDTNNKRFHIQGISCKKC EHHHHHHHHHCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC GIAIDYKQLEDYDALLECAKDIQKGKIIALKGLGGFALVCDARNFQSIERLRLLKKRPLK CEEEEHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHCCCC PFALMFKDLNTAKQYVFLNELECESLRSANAPILLAHKKPDTKLAPNIAKNSPFYGVILP HHHHHHHHHHHHHHEEEEECCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECC YTPLHALLLDLLDFPIVFTSANFNSLPLASDEKEMDRFHFIFDFKLTHNRTIIHRIDDSI CCHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHCCEEEEEEEEEECCCEEEHHHHHHH TQYVDNAIRPMRLARGFAPLYLTLPKRSTHSPTKILALGAEQKGHFSLLDSETSVLLLSP HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEECCCCCEEEEEC FCGDLSVLENEKHFKETLNFFLNTYNFKPTLLSCDEHKNYTTTKMAFDFNTPLLQVQHHH CCCCHHHHCCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCEEEEEEEECCCCEEEEHHHH AHFLASMLDAFLQDPHLNYPFIGIVWDGSGAYENKIYGAECFVGDFNQIEEAARFEEFLL HHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCEECCEEEECCHHHHHHHHHHHHHHH LGGQKAIKEPKRLVLEIALKHQLNKLLKRIQKHFKEDEIEIFKQMHAKAIQSVATNSIGR HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH LFDIVAFSLGAVETIGFEAESGQVLENLALQSEEIAFYPFKIKNSVVGLKEFYQAFEKDL HHHHHHHHHCCHHHCCCCCCCCHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC DILEPKHIAKKFFNSLIEIIIALIAPFKEHVVVCSGGVFCNQLLCEQLAKRLKTLQRKYF CCCCHHHHHHHHHHHHHHHHHHHHCCHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHH FHKHFPPNDSSIAVGQALMAYFNPTIIKKG HHCCCCCCCCCHHHHHHHHHHHCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]